| Protein: | gi|168275726 |
| Organism: | synthetic construct |
| Length: | 1214 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168275726.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1214] | [1..1214] |
|
|
0.0 | [1..1214] | [1..1214] |
|
|
0.0 | [1..1214] | [1..1214] |
|
|
0.0 | [1..1214] | [1..1213] |
|
|
0.0 | [1..1214] | [1..1247] |
|
Region A: Residues: [1-116] |
1 11 21 31 41 51
| | | | | |
1 MGVDFDVKTF CHNLRATKPP YECPVETCRK VYKSYSGIEY HLYHYDHDNP PPPQQTPLRK 60
61 HKKKGRQSRP ANKQSPSPSE VSQSPGREVM SYAQAQRMVE VDLHGRVHRI SIFDNL
|
| Detection Method: |  |
| Confidence: | 2.02 |
| Match: | 2ghfA |
| Description: | No description for 2ghfA was found. |
| Term | Confidence | Notes |
| binding | 2.56065593409893 | bayes_pls_golite062009 |
| DNA binding | 2.12670364830465 | bayes_pls_golite062009 |
| nucleic acid binding | 2.03166503403228 | bayes_pls_golite062009 |
| transcription regulator activity | 1.89798946190385 | bayes_pls_golite062009 |
| transcription factor activity | 1.25050641170057 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.983792216045634 | bayes_pls_golite062009 |
| protein binding | 0.975412203442928 | bayes_pls_golite062009 |
| transcription activator activity | 0.682903516955242 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.343953984757786 | bayes_pls_golite062009 |
| chromatin binding | 0.187378781886193 | bayes_pls_golite062009 |
| transcription repressor activity | 0.0838352585191493 | bayes_pls_golite062009 |
| transcription factor binding | 0.059503646600688 | bayes_pls_golite062009 |
|
Region A: Residues: [117-260] |
1 11 21 31 41 51
| | | | | |
1 DVVSEDEEAP EEAPENGSNK ENTETPAATP KSGKHKNKEK RKDSNHHHHH NVSASTTPKL 60
61 PEVVYRELEQ DTPDAPPRPT SYYRYIEKSA EELDEEVEYD MDEEDYIWLD IMNERRKTEG 120
121 VSPIPQEIFE YLMDRLEKES YFES
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.369 | a.74.1 | Cyclin-like |
| View | Download | 0.229 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.202 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.309 | c.120.1 | PIN domain-like |
|
Region A: Residues: [261-454] |
1 11 21 31 41 51
| | | | | |
1 HNKGDPNALV DEDAVCCICN DGECQNSNVI LFCDMCNLAV HQECYGVPYI PEGQWLCRRC 60
61 LQSPSRAVDC ALCPNKGGAF KQTDDGRWAH VVCALWIPEV CFANTVFLEP IDSIEHIPPA 120
121 RWKLTCYICK QRGSGACIQC HKANCYTAFH VTCAQQAGLY MKMEPVRETG ANGTSFSVRK 180
181 TAYCDIHTPP GSAR
|
| Detection Method: | |
| Confidence: | 8.69897 |
| Match: | 2ysmA |
| Description: | No description for 2ysmA was found. |
|
Region A: Residues: [455-624] |
1 11 21 31 41 51
| | | | | |
1 RLPALSHSEG EEDEDEEEDE GKGWSSEKVK KAKAKSRIKM KKARKILAEK RAAAPVVSVP 60
61 CIPPHRLSKI TNRLTIQRKS QFMQRLHSYW TLKRQSRNGV PLLRRLQTHL QSQRNCDQVG 120
121 RDSEDKNWAL KEQLKSWQRL RHDLERARLL VELIRKREKL KRETIKVQQI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [625-752] |
1 11 21 31 41 51
| | | | | |
1 AMEMQLTPFL ILLRKTLEQL QEKDTGNIFS EPVPLSEVPD YLDHIKKPMD FFTMKQNLEA 60
61 YRYLNFDDFE EDFNLIVSNC LKYNAKDTIF YRAAVRLREQ GGAVLRQARR QAEKMGIDFE 120
121 TGMHIPHS
|
| Detection Method: | |
| Confidence: | 25.045757 |
| Match: | 2d9eA |
| Description: | No description for 2d9eA was found. |
|
Region A: Residues: [753-873] |
1 11 21 31 41 51
| | | | | |
1 LAGDEATHHT EDAAEEERLV LLENQKHLPV EEQLKLLLER LDEVNASKQS VGRSRRAKMI 60
61 KKEMTALRRK LAHQRETGRD GPERHGPSSR GSLTPHPAAC DKDGQTDSAA EESSSQETSK 120
121 G
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [874-1076] |
1 11 21 31 41 51
| | | | | |
1 LGPNMSSTPA HEVGRRTSVL FSKKNPKTAG PPKRPGRPPK NRESQMTPSH GGSPVGPPQL 60
61 PIMSSLRQRK RGRSPRPSSS SDSDSDKSTE DPPMDLPANG FSGGNQPVKK SFLVYRNDCS 120
121 LPRSSSDSES SSSSSSSAAS DRTSTTPSKQ GRGKPSFSRG TFPEDSSEDT SGTENEAYSV 180
181 GTGRGVGHSM VRKSLGRGAG WLS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1077-1214] |
1 11 21 31 41 51
| | | | | |
1 EDEDSPLDAL DLVWAKCRGY PSYPALIIDP KMPREGMFHH GVPIPVPPLE VLKLGEQMTQ 60
61 EAREHLYLVL FFDNKRTWQW LPRTKLVPLG VNQDLDKEKM LEGRKSNIRK SVQIAYHRAL 120
121 QHRSKVQGEQ SSETSDSD
|
| Detection Method: | |
| Confidence: | 19.522879 |
| Match: | 2gfuA |
| Description: | No description for 2gfuA was found. |
