| Protein: | gi|208966442, gi... |
| Organism: | synthetic construct |
| Length: | 536 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208966442, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..536] | [66..599] |
|
|
0.0 | [1..536] | [1..535] |
|
|
0.0 | [30..536] | [73..578] |
|
|
0.0 | [1..536] | [1..518] |
|
|
0.0 | [1..517] | [1..517] |
|
|
0.0 | [1..536] | [1..513] |
|
Region A: Residues: [1-98] |
1 11 21 31 41 51
| | | | | |
1 MKQSSNVPAF LSKLWTLVEE THTNEFITWS QNGQSFLVLD EQRFAKEILP KYFKHNNMAS 60
61 FVRQLNMYGF RKVVHIDSGI VKQERDGPVE FQHPYFKQ
|
| Detection Method: |  |
| Confidence: | 36.69897 |
| Match: | 1hksA |
| Description: | SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF DROSOPHILA HEAT SHOCK TRANSCRIPTION FACTOR |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.55329976718261 | bayes_pls_golite062009 |
| DNA binding | 5.08959163553491 | bayes_pls_golite062009 |
| nucleic acid binding | 4.69183445184264 | bayes_pls_golite062009 |
| transcription factor activity | 4.33152142980289 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.60738445921725 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.48053910222825 | bayes_pls_golite062009 |
| transcription activator activity | 2.37668609508629 | bayes_pls_golite062009 |
| transcription repressor activity | 2.22485867684613 | bayes_pls_golite062009 |
| transcription factor binding | 0.85714789329232 | bayes_pls_golite062009 |
| protein binding | 0.753698599635855 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.66743181561551 | bayes_pls_golite062009 |
| specific transcriptional repressor activity | 0.0565989703351002 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.0360186926687502 | bayes_pls_golite062009 |
|
Region A: Residues: [99-201] |
1 11 21 31 41 51
| | | | | |
1 GQDDLLENIK RKVSSSKPEE NKIRQEDLTK IISSAQKVQI KQETIESRLS ELKSENESLW 60
61 KEVSELRAKH AQQQQVIRKI VQFIVTLVQN NQLVSLKRKR PLL
|
| Detection Method: | |
| Confidence: | 8.60206 |
| Match: | PF00447.8 |
| Description: | No description for PF00447.8 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [202-355] |
1 11 21 31 41 51
| | | | | |
1 LNTNGAQKKN LFQHIVKEPT DNHHHKVPHS RTEGLKPRER ISDDIIIYDV TDDNADEENI 60
61 PVIPETNEDV ISDPSNCSQY PDIVIVEDDN EDEYAPVIQS GEQNEPARES LSSGSDGSSP 120
121 LMSSAVQLNG SSSLTSEDPV TMMDSILNDN INLL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [356-536] |
1 11 21 31 41 51
| | | | | |
1 GKVELLDYLD SIDCSLEDFQ AMLSGRQFSI DPDLLVDLFT SSVQMNPTDY INNTKSENKG 60
61 LETTKNNVVQ PVSEEGRKSK SKPDKQLIQY TAFPLLAFLD GNPASSVEQA STTASSEVLS 120
121 SVDKPIEVDE LLDSSLDPEP TQSKLVRLEP LTEAEASEAT LFYLCELAPA PLDSDMPLLD 180
181 S
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
