YRC Public Data Repository - Protein Structure Prediction

Protein:	RS9_CAUCN
Organism:	Caulobacter crescentus NA1000
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS9_CAUCN.

Description	E-value	Query Range	Subject Range
RS9_CAUSK - 30S ribosomal protein S9 OS=Caulobacter sp. (strain K31) GN=rpsI PE=3 SV=1	215.0	[0..1]	[157..1]
RS9_RHORT - 30S ribosomal protein S9 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 436... gi\|48763062 - ref\|ZP_00267618.1\| COG0103: Ribosomal protein S9 [Rhodospirillum rubrum]	205.0	[0..3]	[157..4]
gi\|22655228, gi\|... - gi\|51971441\|dbj\|BAD44385.1\| hypothetical protein [Arabidopsis thaliana], gi\|30693135\|ref\|NP_190477.2...	203.0	[0..2]	[157..275]
gi\|84704913, gi\|... - gi\|84704913\|ref\|ZP_01018413.1\| 30S ribosomal protein S9 [Parvularcula bermudensis HTCC2503], gi\|8468...	198.0	[0..5]	[157..17]
RS9_BARHE - 30S ribosomal protein S9 OS=Bartonella henselae GN=rpsI PE=3 SV=1 RS9_BARHE - 30S ribosomal protein S9 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rpsI ...	196.0	[0..1]	[157..1]
gi\|114706905, gi... - gi\|114706905\|ref\|ZP_01439805.1\| 30S ribosomal protein S9 [Fulvimarina pelagi HTCC2506], gi\|114537853...	196.0	[0..1]	[157..1]
gi\|33354201, gi\|... - gi\|50939755\|ref\|XP_479405.1\| putative 30S ribosomal protein S9 [Oryza sativa (japonica cultivar-grou...	195.0	[0..3]	[157..261]
gi\|110633516, gi... - gi\|69277676\|ref\|ZP_00613011.1\| Ribosomal protein S9 [Mesorhizobium sp. BNC1], gi\|68191553\|gb\|EAN0620...	194.0	[0..1]	[157..1]
gi\|83858246, gi\|... - gi\|83858246\|ref\|ZP_00951768.1\| 30S ribosomal protein S9 [Oceanicaulis alexandrii HTCC2633], gi\|83853...	194.0	[0..3]	[157..4]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDAQGFDAL ASLSSNPEAA APAEPKIDAQ GRAYATGKRK NAIARVWIKP GKGSITINGR  60
   61 DQEVYFARPV LRMMIAQPLE VTDRLGQFDV VVTVEGSGLS GQAGAIRHGL SKALTYYEPG 120
  121 LRPVLKPHGF LTRDSRVVER KKYGKAKARR SFQFSKR

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Detection Method:	PSI-BLAST
Confidence:	46.221849
Match:	1vs5I
Description:	No description for 1vs5I was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	7.32829196949019	bayes_pls_golite062009
structural molecule activity	6.75880680396215	bayes_pls_golite062009
3'-5'-exoribonuclease activity	1.56111033008721	bayes_pls_golite062009
RNA binding	1.40868766468494	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	1.35935222635763	bayes_pls_golite062009
exoribonuclease activity	1.31205157616894	bayes_pls_golite062009
3'-5' exonuclease activity	1.10842504252923	bayes_pls_golite062009
catalytic activity	0.878454819018611	bayes_pls_golite062009
nucleic acid binding	0.555181608481691	bayes_pls_golite062009
binding	0.478154009944658	bayes_pls_golite062009
transcription regulator activity	0.368412900600617	bayes_pls_golite062009
ribonuclease activity	0.19921800066954	bayes_pls_golite062009
DNA binding	0.0880977286684361	bayes_pls_golite062009
mRNA binding	0.0491645692672305	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	6.9430052008157E-5	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: