YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213051740
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	685 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213051740.

Description	E-value	Query Range	Subject Range
gi\|197261970, gi... - gi\|197261970\|ref\|ZP_03162044.1\| ferrichrome transport system permease protein FhuB [Salmonella enter... FHUB_SALTY - Ferrichrome transport system permease protein fhuB OS=Salmonella typhimurium GN=fhuB PE=3 SV=2 FHUB_SALTY - Iron(3+)-hydroxamate import system permease protein fhuB OS=Salmonella typhimurium GN=fhuB PE=1 SV=2 FHUB_SALTY - Iron(3+)-hydroxamate import system permease protein FhuB OS=Salmonella typhimurium (strain LT2 / SGS...	0.0	[1..685]	[1..685]
gi\|172081695, gi... - gi\|177653171\|ref\|ZP_02935458.1\| iron compound ABC transporter, permease protein [Bacillus anthracis ... gi\|190562014, gi... - gi\|190567023\|ref\|ZP_03019939.1\| iron compound ABC transporter, permease protein [Bacillus anthracis ... gi\|167635598, gi... - gi\|167635598\|ref\|ZP_02393910.1\| iron compound ABC transporter, permease protein [Bacillus anthracis ... gi\|170688285, gi... - gi\|170688285\|ref\|ZP_02879495.1\| iron compound ABC transporter, permease protein [Bacillus anthracis ... gi\|229267622, gi... - gi\|229603214\|ref\|YP_002868808.1\| iron compound ABC transporter, permease protein [Bacillus anthracis... gi\|227006399, gi... - gi\|227817311\|ref\|YP_002817320.1\| iron compound ABC transporter, permease protein [Bacillus anthracis... gi\|49187420, gi\|... - gi\|49187420\|ref\|YP_030672.1\| iron-hydroxamate transporter permease subunit [Bacillus anthracis str. ... gi\|47505214, gi\|... - gi\|47530066\|ref\|YP_021415.1\| iron-hydroxamate transporter permease subunit [Bacillus anthracis str. ... gi\|254754732 - gi\|254754732\|ref\|ZP_05206767.1\| iron-hydroxamate transporter permease subunit [Bacillus anthracis st... gi\|254741671 - gi\|254741671\|ref\|ZP_05199358.1\| iron-hydroxamate transporter permease subunit [Bacillus anthracis st... gi\|254736633 - gi\|254736633\|ref\|ZP_05194339.1\| iron-hydroxamate transporter permease subunit [Bacillus anthracis st... gi\|254686981 - gi\|254686981\|ref\|ZP_05150839.1\| iron-hydroxamate transporter permease subunit [Bacillus anthracis st... gi\|254757564 - gi\|254757564\|ref\|ZP_05209591.1\| iron-hydroxamate transporter permease subunit [Bacillus anthracis st... gi\|30259254, gi\|... - gi\|30264596\|ref\|NP_846973.1\| iron-hydroxamate transporter permease subunit [Bacillus anthracis str. ...	1.0E-99	[28..685]	[7..675]
gi\|163942260, gi... - gi\|89205311\|ref\|ZP_01183882.1\| transport system permease protein [Bacillus weihenstephanensis KBAB4]...	2.0E-99	[28..685]	[7..675]
gi\|197361405, gi... - gi\|197361405\|ref\|YP_002141040.1\| iron-hydroxamate transporter permease subunit [Salmonella enterica ... gi\|56412469, gi\|... - gi\|56412469\|ref\|YP_149544.1\| iron-hydroxamate transporter permease subunit [Salmonella enterica subs...	2.0E-99	[1..685]	[1..685]
gi\|65321894, gi\|... - gi\|65321894\|ref\|ZP_00394853.1\| COG0609: ABC-type Fe3+-siderophore transport system, permease compone...	3.0E-99	[28..685]	[7..675]
gi\|62126397, gi\|... - gi\|62178764\|ref\|YP_215181.1\| iron-hydroxamate transporter permease subunit [Salmonella enterica subs...	7.0E-99	[1..684]	[1..684]
gi\|49330237, gi\|... - gi\|49478681\|ref\|YP_038580.1\| iron-hydroxamate transporter permease subunit [Bacillus thuringiensis s...	2.0E-98	[28..685]	[7..675]
gi\|75909040, gi\|... - gi\|75909040\|ref\|YP_323336.1\| iron-hydroxamate transporter permease subunit [Anabaena variabilis ATCC...	2.0E-95	[68..680]	[19..638]
gi\|86146988, gi\|... - gi\|86146988\|ref\|ZP_01065306.1\| ABC-type hydroxamate-dependent iron transport system, permease compon...	1.0E-88	[54..682]	[38..665]
gi\|90409907, gi\|... - gi\|90409907\|ref\|ZP_01217924.1\| ferrichrome transport system permease protein FhuB [Photobacterium pr...	2.0E-88	[36..682]	[29..680]

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Predicted Domain #1

Region A:
Residues: [1-357]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRKREIPDG GAKNALTDLR FGRFVGRIRR SRHPALLLLA LLVAACWLTW VNFSVALPRS  60
   61 QWQQAIWSPD IDIIEQMIFH YSQLPRLAIS LLVGAGLGLV GVLFQQVLRN PLAEPTTLGV 120
  121 ATGAQLGITV TTLWAIPGAL TTQFAALTGA CIVGALVFGV AWGKRLSPVT LILAGLVVSL 180
  181 YCGAINQLLV IFHHDQLQSM FLWSTGTLTQ TDWSGVQRLW PQLLGGVMLT LLLLRPMTLM 240
  241 GLDDGVARNL GLALSLARLA ALSLAIVLSA LLVNAVGIIG FIGLFAPLLA KMLGARRLLA 300
  301 RLMLAPLIGA LILWLSDQII LWLTRVWMEV STGSVTALIG APLLLWLLPR LKSMSAP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	2nq2A
Description:	No description for 2nq2A was found.

Predicted Domain #2

Region A:
Residues: [358-685]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DMNASDRVAA ERRHVLTFAV AGGALLLLAT WVALSFGRDA HGWTWASGTL LEELMPWRWP  60
   61 RILAALMAGV MLAVAGCIIQ RLTGNPMASP EVLGISSGAA FGVVLMLFLV PGNAFGWLLP 120
  121 AGSLGAAATL LIIMIAAGRG GFSPQRMLLA GMALSTAFTM LLMMLQASGD PRMADVLTWI 180
  181 SGSTYNATGG QVTRTAIVMV ILLAVVPLCR RWLTILPLGG DAARAVGIAL TPSRIALLAL 240
  241 AACLTATATM TIGPLSFVGL MAPHIARMLG FRRTMPHMVI SALAGGVLLV FADWCGRMAL 300
  301 FPYQIPAGLL SSFIGAPYFI YLLRKQSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.522879
Match:	1l7vA
Description:	ABC transporter involved in vitamin B12 uptake, BtuC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
iron ion transmembrane transporter activity	8.55593410962699	bayes_pls_golite062009
metal ion transmembrane transporter activity	7.151741771764	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	6.89351560294196	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	6.89303905792457	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	6.89303905792457	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	6.87925267157243	bayes_pls_golite062009
primary active transmembrane transporter activity	6.86902581504498	bayes_pls_golite062009
active transmembrane transporter activity	6.77850031149726	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	6.57608007042658	bayes_pls_golite062009
cation transmembrane transporter activity	6.31692387243447	bayes_pls_golite062009
ATPase activity, coupled	6.20998686742636	bayes_pls_golite062009
ion transmembrane transporter activity	6.20895469812824	bayes_pls_golite062009
ATPase activity	5.86694519684157	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	5.83345351962065	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.77899233548357	bayes_pls_golite062009
nucleoside-triphosphatase activity	5.53932239936879	bayes_pls_golite062009
heme transporter activity	5.52078940808773	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	5.48489417595047	bayes_pls_golite062009
pyrophosphatase activity	5.46424384705161	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	5.44387469717844	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	5.4435161646875	bayes_pls_golite062009
transporter activity	5.10647347588263	bayes_pls_golite062009
transmembrane transporter activity	4.86330633635492	bayes_pls_golite062009
substrate-specific transporter activity	3.90947011459529	bayes_pls_golite062009
hydrolase activity	3.81025268759093	bayes_pls_golite062009
vitamin transporter activity	3.49692616340822	bayes_pls_golite062009
cofactor transporter activity	3.1133731629348	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: