YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168803087, gi...
Organism:	Escherichia coli O157:H7 str. EC508
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168803087, gi....

Description	E-value	Query Range	Subject Range
RR14_MESVI - 30S ribosomal protein S14, chloroplastic OS=Mesostigma viride GN=rps14 PE=3 SV=1	145.0	[0..1]	[101..1]
RS14_MARHV - 30S ribosomal protein S14 OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT...	143.0	[0..1]	[101..1]
RS14_CHRSD - 30S ribosomal protein S14 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 137...	142.0	[0..1]	[101..1]
gi\|86161752, gi\|... - gi\|87122984\|ref\|ZP_01078845.1\| 30S ribosomal subunit protein S14 [Marinomonas sp. MED121], gi\|861617...	141.0	[0..1]	[101..1]
RS14_ACIAD - 30S ribosomal protein S14 OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=rpsN PE=3 SV...	140.0	[0..1]	[101..1]
RS14_DECAR - 30S ribosomal protein S14 OS=Dechloromonas aromatica (strain RCB) GN=rpsN PE=3 SV=1	140.0	[0..1]	[101..1]
gi\|90417582\|ref\|... - 30S ribosomal protein S14 [marine gamma proteobacterium HTCC2207] gi\|90417582, gi\|... - gi\|90417582\|ref\|ZP_01225500.1\| 30S ribosomal protein S14 [marine gamma proteobacterium HTCC2207], gi...	140.0	[0..1]	[101..1]
RS14_BORPA - 30S ribosomal protein S14 OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN=... RS14_BORBR - 30S ribosomal protein S14 OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=... RS14_BORPE - 30S ribosomal protein S14 OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=r... RS14_BORBR - 30S ribosomal protein S14 OS=Bordetella bronchiseptica GN=rpsN PE=3 SV=1 RS14_BORPA - 30S ribosomal protein S14 OS=Bordetella parapertussis GN=rpsN PE=3 SV=1 RS14_BORPE - 30S ribosomal protein S14 OS=Bordetella pertussis GN=rpsN PE=3 SV=1	139.0	[0..1]	[101..1]
RS14_HAES1 - 30S ribosomal protein S14 OS=Haemophilus somnus (strain 129Pt) GN=rpsN PE=3 SV=1 RS14_HISS2 - 30S ribosomal protein S14 OS=Histophilus somni (strain 2336) GN=rpsN PE=3 SV=1	139.0	[0..1]	[101..1]
RS14_RHOS1 - 30S ribosomal protein S14 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpsN PE=3 SV... RS14_RHOS4 - 30S ribosomal protein S14 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 15... gi\|221638126, gi... - gi\|221638126\|ref\|YP_002524388.1\| SSU ribosomal protein S14P [Rhodobacter sphaeroides KD131], gi\|2211... RS14_RHOS5 - 30S ribosomal protein S14 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsN PE=3 SV...	139.0	[0..1]	[101..1]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKQSMKARE VKRVALADKY FAKRAELKAI ISDVNASDED RWNAVLKLQT LPRDSSPSRQ  60
   61 RNRCRQTGRP HGFLRKFGLS RIKVREAAMR GEIPGLKKAS W

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	1vs5N
Description:	No description for 1vs5N was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	6.46626105355287	bayes_pls_golite062009
structural molecule activity	5.9950507001335	bayes_pls_golite062009
binding	2.38688645545392	bayes_pls_golite062009
transcription regulator activity	1.92713003801314	bayes_pls_golite062009
nucleic acid binding	1.78943375122683	bayes_pls_golite062009
DNA binding	1.76229029583767	bayes_pls_golite062009
protein binding	1.60194768638501	bayes_pls_golite062009
transcription factor activity	1.15014535964426	bayes_pls_golite062009
general RNA polymerase II transcription factor activity	0.99776558176649	bayes_pls_golite062009
sequence-specific DNA binding	0.36307842011603	bayes_pls_golite062009
transcription activator activity	0.30551145939731	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.2038327599988	bayes_pls_golite062009
ligand-dependent nuclear receptor activity	0.15407483499486	bayes_pls_golite062009
catalytic activity	0.101795606736461	bayes_pls_golite062009
transcription factor binding	0.0507779401401098	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: