YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190407127
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190407127.

Description	E-value	Query Range	Subject Range
COX4_YEAST - Cytochrome c oxidase subunit 4, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288... gi\|190407127 - gi\|190407127\|gb\|EDV10394.1\| cytochrome c oxidase subunit IV [Saccharomyces cerevisiae RM11-1a] gi\|151943629 - gi\|151943629\|gb\|EDN61939.1\| cytochrome c oxidase subunit IV [Saccharomyces cerevisiae YJM789] COX4 - Subunit IV of cytochrome c oxidase, the terminal member of the mitochondrial inner membrane electron...	5.0E-67	[1..155]	[1..155]
COX4_SCHPO - Cytochrome c oxidase subunit 4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)... cox4 - cytochrome c oxidase subunit IV	1.0E-52	[26..155]	[35..164]
COX5B_MOUSE - Cytochrome c oxidase subunit 5B, mitochondrial OS=Mus musculus GN=Cox5b PE=1 SV=1	3.0E-41	[19..145]	[1..123]
COX5B_BOVIN, COX... - (P00428) Cytochrome c oxidase polypeptide Vb (EC 1.9.3.1) (VI), (P00428) Cytochrome c oxidase polype...	4.0E-39	[51..145]	[1..93]
COX5B_RAT - Cytochrome c oxidase subunit 5B, mitochondrial OS=Rattus norvegicus GN=Cox5b PE=1 SV=2	6.0E-39	[19..145]	[1..124]
gi\|60656153, gi\|... - gi\|60656153\|gb\|AAX32640.1\| cytochrome c oxidase subunit Vb [synthetic construct], gi\|208966106\|dbj\|B... COX5B - cytochrome c oxidase subunit Vb	3.0E-38	[33..145]	[13..124]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLRQSIRF FKPATRTLCS SRYLLQQKPV VKTAQNLAEV NGPETLIGPG AKEGTVPTDL  60
   61 DQETGLARLE LLGKLEGIDV FDTKPLDSSR KGTMKDPIII ESYDDYRYVG CTGSPAGSHT 120
  121 IMWLKPTVNE VARCWECGSV YKLNPVGVPN DDHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	120.156545
Match:	1occF_
Description:	Cytochrome c oxidase Subunit F
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [77-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIDVFDTKPL DSSRKGTMKD PIIIESYDDY RYVGCTGSPA GSHTIMWLKP TVNEVARCWE  60
   61 CGSVYKLNPV GVPNDDHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	2odxA
Description:	No description for 2odxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits