YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218556403, gi...
Organism:	Escherichia coli IAI1
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218556403, gi....

Description	E-value	Query Range	Subject Range
gi\|161984818 - gi\|161984818\|ref\|YP_410137.2\| sec-independent translocase [Shigella boydii Sb227] gi\|75177803, gi\|... - gi\|75177803\|ref\|ZP_00697868.1\| COG1826: Sec-independent protein secretion pathway components [Shigel...	128.0	[0..1]	[171..1]
gi\|192958595, gi... - gi\|75238287\|ref\|ZP_00722286.1\| COG1826: Sec-independent protein secretion pathway components [Escher...	127.0	[0..1]	[171..1]
TATB_ECOL5 - Sec-independent protein translocase protein TatB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) ... TATB_ECOL6 - Sec-independent protein translocase protein TatB OS=Escherichia coli O6 GN=tatB PE=3 SV=1 TATB_ECOUT - Sec-independent protein translocase protein TatB OS=Escherichia coli (strain UTI89 / UPEC) GN=tatB P... gi\|75237628, gi\|... - gi\|75237628\|ref\|ZP_00721648.1\| COG1826: Sec-independent protein secretion pathway components [Escher... gi\|218367689, gi... - gi\|218560920\|ref\|YP_002393833.1\| sec-independent translocase [Escherichia coli S88], gi\|218367689\|em... gi\|215267250, gi... - gi\|215489178\|ref\|YP_002331609.1\| sec-independent translocase [Escherichia coli O127:H6 str. E2348/69... gi\|218692131, gi... - gi\|218692131\|ref\|YP_002400343.1\| sec-independent translocase [Escherichia coli ED1a], gi\|218429695\|e... gi\|227888549, gi... - gi\|227888549\|ref\|ZP_04006354.1\| sec-independent translocase [Escherichia coli 83972], gi\|227834388\|g... gi\|237702872, gi... - gi\|237702872\|ref\|ZP_04533353.1\| sec-independent translocase [Escherichia sp. 3_2_53FAA], gi\|22690304... TATB_ECOL6 - Sec-independent protein translocase protein TatB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700...	126.0	[0..1]	[171..1]
TATB_ECOK1 - Sec-independent protein translocase protein TatB OS=Escherichia coli O1:K1 / APEC GN=tatB PE=3 SV=1	124.0	[0..1]	[171..1]
gi\|124896048, gi... - gi\|84360597\|ref\|ZP_00985295.1\| COG1826: Sec-independent protein secretion pathway components [Burkho...	124.0	[0..1]	[171..1]
gi\|170135587, gi... - gi\|170699500\|ref\|ZP_02890542.1\| twin-arginine translocation protein, TatB subunit [Burkholderia ambi... TATB_BURCM - Sec-independent protein translocase protein TatB OS=Burkholderia ambifaria (strain ATCC BAA-244 / AM...	123.0	[0..1]	[171..1]
TATB_BURL3 - Sec-independent protein translocase protein TatB OS=Burkholderia lata (strain ATCC 17760 / LMG 22485... TATB_BURS3 - Sec-independent protein translocase protein TatB OS=Burkholderia sp. (strain 383) GN=tatB PE=3 SV=1	121.0	[0..1]	[171..1]
gi\|67533054, gi\|... - gi\|67545725\|ref\|ZP_00423645.1\| Twin-arginine translocation protein TatB [Burkholderia vietnamiensis ...	120.0	[0..1]	[171..1]
TATB_BURCH - Sec-independent protein translocase protein TatB OS=Burkholderia cenocepacia (strain HI2424) GN=tatB... TATB_BURCA - Sec-independent protein translocase protein TatB OS=Burkholderia cenocepacia (strain AU 1054) GN=tat... gi\|124871292, gi... - gi\|254246516\|ref\|ZP_04939837.1\| Twin-arginine translocation protein TatB [Burkholderia cenocepacia P... gi\|169815013, gi... - gi\|170731771\|ref\|YP_001763718.1\| sec-independent translocase [Burkholderia cenocepacia MC0-3], gi\|16...	120.0	[0..1]	[171..1]
gi\|90412762, gi\|... - gi\|90412762\|ref\|ZP_01220763.1\| sec-independent translocase [Photobacterium profundum 3TCK], gi\|90326...	112.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDIGFSELL LVFIIGLVVL GPQRLPVAVK TVAGWIRALR SLATTVQNEL TQELKLQEFQ  60
   61 DSLKKVEKAS LTNLTPELKA SMDELRQAAE SMKRSYVAND PEKASDEAHT IHNPVVKDNE 120
  121 AAHEGVTPAA AQTQASSPEQ KPETTPEPVV KPAADAEPKT AAPSPSSSDK P

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.21
Match:	1q1qA
Description:	Crystal structure of human pregnenolone sulfotransferase (SULT2B1a) in the presence of PAP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleoside-triphosphatase activity	1.6749295674032	bayes_pls_golite062009
pyrophosphatase activity	1.63964955562648	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.63106484827742	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.62950857763144	bayes_pls_golite062009
transporter activity	1.38363760794663	bayes_pls_golite062009
ATPase activity	1.23430390016836	bayes_pls_golite062009
transmembrane transporter activity	1.20506271995455	bayes_pls_golite062009
ATPase activity, coupled	1.12862606264249	bayes_pls_golite062009
active transmembrane transporter activity	1.02570308316767	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.969594446541413	bayes_pls_golite062009
primary active transmembrane transporter activity	0.965457732082263	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.938795737067973	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.937489803502455	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.937072573224977	bayes_pls_golite062009
hydrolase activity	0.924021405962032	bayes_pls_golite062009
binding	0.791728094008514	bayes_pls_golite062009
catalytic activity	0.546652639897013	bayes_pls_golite062009
purine ribonucleotide binding	0.294801068193389	bayes_pls_golite062009
ribonucleotide binding	0.294367748229539	bayes_pls_golite062009
purine nucleotide binding	0.291124219696449	bayes_pls_golite062009
nucleotide binding	0.280683782263924	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: