YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|221140452
Organism:	Staphylococcus aureus subsp. aureus str. JKD6009
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221140452.

Description	E-value	Query Range	Subject Range
MURI_STAHJ - Glutamate racemase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=murI PE=3 SV=1	312.0	[0..1]	[266..1]
gi\|227851254, gi... - gi\|227900427\|ref\|ZP_04018232.1\| glutamate racemase [Staphylococcus aureus subsp. aureus TCH60], gi\|2... gi\|227244986, gi... - gi\|227558638\|ref\|ZP_03988685.1\| glutamate racemase [Staphylococcus aureus subsp. aureus MN8], gi\|227... MURI_STAAR - Glutamate racemase OS=Staphylococcus aureus (strain MRSA252) GN=murI PE=1 SV=1	311.0	[0..1]	[266..1]
MURI_STAEQ - Glutamate racemase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=murI PE=3 SV=1 gi\|242234100, gi... - gi\|242242450\|ref\|ZP_04796895.1\| glutamate racemase [Staphylococcus epidermidis W23144], gi\|242234100...	310.0	[0..1]	[266..1]
MURI_STAEP - (Q8CPL0) Glutamate racemase (EC 5.1.1.3) gi\|251805758, gi... - gi\|251810598\|ref\|ZP_04825071.1\| glutamate racemase [Staphylococcus epidermidis BCM-HMP0060], gi\|2518... MURI_STAES - Glutamate racemase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=murI PE=3 SV=1	310.0	[0..1]	[266..1]
MURI_STAAB - Glutamate racemase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=murI PE=3 SV=1	309.0	[0..1]	[266..1]
MURI_STAHA - Glutamate racemase OS=Staphylococcus haemolyticus GN=murI PE=3 SV=1	307.0	[0..1]	[266..1]
gi\|39998014, gi\|... - gi\|39998014\|ref\|NP_953965.1\| glutamate racemase [Geobacter sulfurreducens PCA], gi\|39984959\|gb\|AAR36...	292.0	[0..3]	[265..4]
gi\|127765628, gi... - gi\|153190644\|ref\|ZP_01938007.1\| glutamate racemase [Listeria monocytogenes J2818], gi\|127765628\|gb\|E... gi\|133727519, gi... - gi\|254872801\|ref\|ZP_05245511.1\| glutamate racemase [Listeria monocytogenes FSL N1-017], gi\|153166592... gi\|153174316, gi... - gi\|254828597\|ref\|ZP_05233284.1\| glutamate racemase [Listeria monocytogenes FSL N3-165], gi\|153174316... gi\|153179317, gi... - gi\|254936234\|ref\|ZP_05267931.1\| glutamate racemase [Listeria monocytogenes F6900], gi\|153179317\|ref\|... gi\|254932885, gi... - gi\|254932885\|ref\|ZP_05266244.1\| glutamate racemase [Listeria monocytogenes HPB2262], gi\|153201942\|re... MURI_LISMC - Glutamate racemase OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=murI PE=3 SV=1 MURI_LISMC - Glutamate racemase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=murI PE=3 SV=1 gi\|254823509 - gi\|254823509\|ref\|ZP_05228510.1\| glutamate racemase [Listeria monocytogenes FSL J1-194] gi\|254852894 - gi\|254852894\|ref\|ZP_05242242.1\| glutamate racemase [Listeria monocytogenes FSL R2-503] gi\|254878575 - gi\|254878575\|ref\|ZP_05251285.1\| glutamate racemase [Listeria monocytogenes FSL J2-071] gi\|254993152 - gi\|254993152\|ref\|ZP_05275342.1\| glutamate racemase [Listeria monocytogenes FSL J2-064] gi\|255025221 - gi\|255025221\|ref\|ZP_05297207.1\| glutamate racemase [Listeria monocytogenes FSL J2-003] gi\|255522515 - gi\|255522515\|ref\|ZP_05389752.1\| glutamate racemase [Listeria monocytogenes FSL J1-175] gi\|224503808 - gi\|224503808\|ref\|ZP_03672115.1\| glutamate racemase [Listeria monocytogenes FSL R2-561] gi\|224499092 - gi\|224499092\|ref\|ZP_03667441.1\| glutamate racemase [Listeria monocytogenes Finland 1988] MURI_LISMO - Glutamate racemase OS=Listeria monocytogenes GN=murI PE=1 SV=1 gi\|47097378, gi\|... - gi\|47097378\|ref\|ZP_00234930.1\| glutamate racemase [Listeria monocytogenes str. 1/2a F6854], gi\|47014... MURI_LISMF - Glutamate racemase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=murI PE=3 SV=1 gi\|126942573, gi... - gi\|254898602\|ref\|ZP_05258526.1\| glutamate racemase [Listeria monocytogenes J0161], gi\|153184602\|ref\|... MURI_LISMO - Glutamate racemase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=murI PE=1... gi\|153196014, gi... - gi\|254830009\|ref\|ZP_05234664.1\| glutamate racemase [Listeria monocytogenes 10403S], gi\|153196014\|ref...	291.0	[0..1]	[264..1]
MURI_LISIN - Glutamate racemase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=murI PE=3 SV=1 MURI_LISIN - Glutamate racemase OS=Listeria innocua GN=murI PE=3 SV=1	291.0	[0..1]	[264..1]
gi\|89086316, gi\|... - gi\|89098912\|ref\|ZP_01171792.1\| glutamate racemase [Bacillus sp. NRRL B-14911], gi\|89086316\|gb\|EAR654...	290.0	[0..1]	[265..1]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKPIGVIDS GVGGLTVAKE IMRQLPNETI YYLGDIGRCP YGPRPGEQVK QYTVEIARKL  60
   61 MEFDIKMLVI ACNTATAVAL EYLQKTLSIP VIGVIEPGAR TAIMTTRNQN VLVLGTEGTI 120
  121 KSEAYRTHIK RINPHVEVHG VACPGFVPLV EQMRYSDPTI TSIVIHQTLK RWRNSESDTV 180
  181 ILGCTHYPLL YKPIYDYFGG KKTVISSGLE TAREVSALLT FSNEHASYTE HPDHRFFATG 240
  241 DPTHITNIIK EWLNLSVNVE RISVND

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.0
Match:	2jfqA
Description:	No description for 2jfqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits