YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|187770614, gi...
Organism:	Escherichia coli O157:H7 str. EC4196
Length:	404 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|187770614, gi....

Description	E-value	Query Range	Subject Range
ISCS_SALPB - Cysteine desulfurase IscS OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=iscS PE=3 SV=1 ISCS_SALEP - Cysteine desulfurase IscS OS=Salmonella enteritidis PT4 (strain P125109) GN=iscS PE=3 SV=1 ISCS_SALG2 - Cysteine desulfurase IscS OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=iscS PE=3 SV=1 gi\|204929449, gi... - gi\|204929449\|ref\|ZP_03220523.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serov... gi\|200389006, gi... - gi\|200389006\|ref\|ZP_03215618.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serov... ISCS_SALTY - Cysteine desulfurase OS=Salmonella typhimurium GN=iscS PE=3 SV=1 ISCS_SALCH - Cysteine desulfurase OS=Salmonella choleraesuis GN=iscS PE=3 SV=1 gi\|238912664 - gi\|238912664\|ref\|ZP_04656501.1\| cysteine desulfurase [Salmonella enterica subsp. enterica serovar Te... ISCS_SALTY - Cysteine desulfurase OS=Salmonella typhimurium GN=iscS PE=3 SV=1 ISCS_SALPA - Cysteine desulfurase IscS OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=iscS PE=3 SV=1 lcl\|NC_016856.1_... - [gene=nifS] [protein=cysteine desulfurase] [protein_id=YP_005238645.1] [location=complement(2733089.... ISCS_SALPA - Cysteine desulfurase OS=Salmonella paratyphi A GN=iscS PE=3 SV=1 ISCS_SALCH - Cysteine desulfurase OS=Salmonella choleraesuis GN=iscS PE=3 SV=1 ISCS_SALCH - Cysteine desulfurase IscS OS=Salmonella choleraesuis (strain SC-B67) GN=iscS PE=3 SV=1 gi\|194471395, gi... - gi\|194471395\|ref\|ZP_03077379.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serov... ISCS_SALHS - Cysteine desulfurase IscS OS=Salmonella heidelberg (strain SL476) GN=iscS PE=3 SV=1 ISCS_SALNS - Cysteine desulfurase IscS OS=Salmonella newport (strain SL254) GN=iscS PE=3 SV=1 ISCS_SALTY - Cysteine desulfurase IscS OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=iscS PE... gi\|168821477, gi... - gi\|205341918\|gb\|EDZ28682.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serovar W... ISCS_SALDC - Cysteine desulfurase IscS OS=Salmonella dublin (strain CT_02021853) GN=iscS PE=3 SV=1 ISCS_SALPK - Cysteine desulfurase IscS OS=Salmonella paratyphi A (strain AKU_12601) GN=iscS PE=3 SV=1 gi\|197263596, gi... - gi\|197263596\|ref\|ZP_03163670.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serov... ISCS_SALPB - Cysteine desulfurase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=iscS PE=3 SV=1 ISCS_SALA4 - Cysteine desulfurase IscS OS=Salmonella agona (strain SL483) GN=iscS PE=3 SV=1 gi\|167992668, gi... - gi\|205329088\|gb\|EDZ15852.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serovar 4... gi\|205325222, gi... - gi\|205325222\|gb\|EDZ13061.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serovar S... gi\|168466701, gi... - gi\|195630769\|gb\|EDX49361.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serovar N... gi\|168261415, gi... - gi\|205349590\|gb\|EDZ36221.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serovar H... gi\|168243327, gi... - gi\|205337629\|gb\|EDZ24393.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serovar H... gi\|205333600, gi... - gi\|205333600\|gb\|EDZ20364.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serovar K...	440.0	[0..1]	[404..1]
gi\|194414604, gi... - gi\|75211496\|ref\|ZP_00711586.1\| COG1104: Cysteine sulfinate desulfinase/cysteine desulfurase and rela...	440.0	[0..1]	[404..1]
gi\|194419577, gi... - gi\|83570750\|ref\|ZP_00922193.1\| COG1104: Cysteine sulfinate desulfinase/cysteine desulfurase and rela...	440.0	[0..1]	[404..1]
gi\|213580753 - gi\|213580753\|ref\|ZP_03362579.1\| cysteine desulfurase [Salmonella enterica subsp. enterica serovar Ty... ISCS_SALTI - Cysteine desulfurase IscS OS=Salmonella typhi GN=iscS PE=3 SV=1 gi\|29136471, gi\|... - gi\|29140846\|ref\|NP_804188.1\| cysteine desulfurase [Salmonella enterica subsp. enterica serovar Typhi... gi\|214000603 - gi\|214000603\|ref\|ZP_03411338.1\| cysteine desulfurase [Salmonella enterica subsp. enterica serovar Ty... gi\|213646425 - gi\|213646425\|ref\|ZP_03376478.1\| cysteine desulfurase [Salmonella enterica subsp. enterica serovar Ty... ISCS_SALTI - Cysteine desulfurase OS=Salmonella typhi GN=iscS PE=3 SV=1 gi\|16761457 - gi\|16761457\|ref\|NP_457074.1\| cysteine desulfurase [Salmonella enterica subsp. enterica serovar Typhi...	440.0	[0..1]	[404..1]
gi\|12516934, gi\|... - gi\|15803057\|ref\|NP_289087.1\| cysteine desulfurase [Escherichia coli O157:H7 EDL933], gi\|12516934\|gb\|... gi\|13362867 - gi\|13362867\|dbj\|BAB36819.1\| cysteine desulfurase [Escherichia coli O157:H7 str. Sakai] gi\|73856533, gi\|... - gi\|74313056\|ref\|YP_311475.1\| putative aminotransferase [Shigella sonnei Ss046], gi\|73856533\|gb\|AAZ89... gi\|91211857, gi\|... - gi\|91211857\|ref\|YP_541843.1\| cysteine desulfurase [Escherichia coli UTI89], gi\|91073431\|gb\|ABE08312.... gi\|115513882, gi... - gi\|117624758\|ref\|YP_853671.1\| cysteine desulfurase [Escherichia coli APEC O1], gi\|115513882\|gb\|ABJ01... gi\|237705041, gi... - gi\|237705041\|ref\|ZP_04535522.1\| cysteine desulfurase [Escherichia sp. 3_2_53FAA], gi\|226901407\|gb\|EE... gi\|7447233, gi\|2... - gi\|7447233\|pir\|\|A65030 probable iron-sulfur cofactor synthesis protein b2530 - Escherichia coli (str... gi\|26248898, gi\|... - gi\|26248898\|ref\|NP_754938.1\| cysteine desulfurase [Escherichia coli CFT073], gi\|26109304\|gb\|AAN81506... gi\|82777913, gi\|... - gi\|82777913\|ref\|YP_404262.1\| putative aminotransferase [Shigella dysenteriae Sd197], gi\|81242061\|gb\|... gi\|13362867 - gi\|13362867\|dbj\|BAB36819.1\| cysteine desulfurase [Escherichia coli O157:H7] gi\|82544979, gi\|... - gi\|82544979\|ref\|YP_408926.1\| putative aminotransferase [Shigella boydii Sb227], gi\|81246390\|gb\|ABB67...	439.0	[0..1]	[404..9]
ISCS_ERWCT - Cysteine desulfurase OS=Erwinia carotovora subsp. atroseptica GN=iscS PE=3 SV=1 ISCS_PECAS - Cysteine desulfurase IscS OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=iscS P...	435.0	[0..1]	[404..1]
gi\|91225150, gi\|... - gi\|91225150\|ref\|ZP_01260372.1\| cysteine desulfurase [Vibrio alginolyticus 12G01], gi\|91190093\|gb\|EAS...	435.0	[0..1]	[404..1]
gi\|194540295, gi... - gi\|75857376\|ref\|ZP_00764992.1\| COG1104: Cysteine sulfinate desulfinase/cysteine desulfurase and rela...	434.0	[0..1]	[404..1]
ISCS_HISS2 - Cysteine desulfurase IscS OS=Histophilus somni (strain 2336) GN=iscS PE=3 SV=1	434.0	[0..1]	[404..1]
ISCS_VIBPA - Cysteine desulfurase OS=Vibrio parahaemolyticus GN=iscS PE=3 SV=1 ISCS_VIBPA - Cysteine desulfurase IscS OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=iscS PE... gi\|153838070, gi... - gi\|153838070\|ref\|ZP_01990737.1\| cysteine desulfurase IscS [Vibrio parahaemolyticus AQ3810], gi\|14974...	434.0	[0..1]	[404..1]

Back

Predicted Domain #1

Region A:
Residues: [1-404]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLPIYLDYS ATTPVDPRVA EKMMQFMTMD GTFGNPASRS HRFGWQAEEA VDIARNQIAD  60
   61 LVGADPREIV FTSGATESDN LAIKGAANFY QKKGKHIITS KTEHKAVLDT CRQLEREGFE 120
  121 VTYLAPQRNG IIDLKELEAA MRDDTILVSI MHVNNEIGVV QDIAAIGEMC RARGIIYHVD 180
  181 ATQSVGKLPI DLSQLKVDLM SFSGHKIYGP KGIGALYVRR KPRVRIEAQM HGGGHERGMR 240
  241 SGTLPVHQIV GMGEAYRIAK EEMATEMERL RGLRNRLWNG IKDIEEVYLN GDLEHGAPNI 300
  301 LNVSFNYVEG ESLIMALKDL AVSSGSACTS ASLEPSYVLR ALGLNDELAH SSIRFSLGRF 360
  361 TTEEEIDYTI ELVRKSIGRL RDLSPLWEMY KQGVDLNSIE WAHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	124.0
Match:	1p3wB
Description:	Cysteine desulfurase IscS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	3.40354781002256	bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity	3.40354781002256	bayes_pls_golite062009
transferase activity	2.59075614411581	bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity	2.30133284041702	bayes_pls_golite062009
catalytic activity	2.29878871754893	bayes_pls_golite062009
cysteine desulfurase activity	1.30923778688541	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
L-alanine:2-oxoglutarate aminotransferase activity	1.06988190956423	bayes_pls_golite062009
alanine-oxo-acid transaminase activity	1.06988190956423	bayes_pls_golite062009
transcription regulator activity	0.977210827616757	bayes_pls_golite062009
binding	0.942651665520336	bayes_pls_golite062009
ligase activity	0.827063849687833	bayes_pls_golite062009
DNA binding	0.803965264969424	bayes_pls_golite062009
nucleic acid binding	0.699955808682622	bayes_pls_golite062009
carbon-sulfur lyase activity	0.698312655247044	bayes_pls_golite062009
transcription factor activity	0.597417107954964	bayes_pls_golite062009
5-aminolevulinate synthase activity	0.54326874956263	bayes_pls_golite062009
cystathionine gamma-lyase activity	0.505859361763689	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.50269055590758	bayes_pls_golite062009
cystathionine beta-lyase activity	0.27933426619091	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	0.271623203801431	bayes_pls_golite062009
O-phospho-L-serine:2-oxoglutarate aminotransferase activity	0.234399054481664	bayes_pls_golite062009
RNA binding	0.222777224430863	bayes_pls_golite062009
vitamin B6 binding	0.16957228630576	bayes_pls_golite062009
pyridoxal phosphate binding	0.16957228630576	bayes_pls_golite062009
methyltransferase activity	0.103986924428507	bayes_pls_golite062009
sulfurtransferase activity	0.0450490929307473	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.0254276656964899	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: