YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218538560, gi...
Organism:	Bacillus cereus AH820
Length:	353 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218538560, gi....

Description	E-value	Query Range	Subject Range
gi\|23099351, gi\|... - gi\|23099351\|ref\|NP_692817.1\| Xaa-Pro dipeptidase [Oceanobacillus iheyensis HTE831], gi\|22777580\|dbj\|...	5.0E-97	[1..353]	[1..353]
gi\|56380788, gi\|... - gi\|56420946\|ref\|YP_148264.1\| Xaa-Pro dipeptidase [Geobacillus kaustophilus HTA426], gi\|56380788\|dbj\|...	4.0E-96	[1..353]	[1..353]
gi\|42783317, gi\|... - gi\|42783317\|ref\|NP_980564.1\| proline dipeptidase [Bacillus cereus ATCC 10987], gi\|42739245\|gb\|AAS431...	1.0E-95	[1..353]	[1..353]
gi\|51974768, gi\|... - gi\|52141299\|ref\|YP_085531.1\| proline dipeptidase, Xaa-Pro dipeptidase [Bacillus cereus E33L], gi\|519...	1.0E-95	[1..353]	[1..353]
gi\|229135021, gi... - gi\|229135021\|ref\|ZP_04263826.1\| Uncharacterized peptidase yqhT [Bacillus cereus BDRD-ST196], gi\|2286... gi\|163941957, gi... - gi\|89207038\|ref\|ZP_01185587.1\| Peptidase M24 [Bacillus weihenstephanensis KBAB4], gi\|89155067\|gb\|EAR...	3.0E-95	[1..353]	[1..353]
gi\|30022281, gi\|... - gi\|30022281\|ref\|NP_833912.1\| Xaa-Pro dipeptidase [Bacillus cereus ATCC 14579], gi\|29897838\|gb\|AAP111... gi\|228654082, gi... - gi\|229129477\|ref\|ZP_04258448.1\| Uncharacterized peptidase yqhT [Bacillus cereus BDRD-Cer4], gi\|22865...	3.0E-95	[1..353]	[1..353]
gi\|49478576, gi\|... - gi\|49478576\|ref\|YP_038259.1\| proline dipeptidase, Xaa-Pro dipeptidase [Bacillus thuringiensis serova...	4.0E-95	[1..353]	[1..353]
gi\|47569457, gi\|... - gi\|47569457\|ref\|ZP_00240138.1\| proline dipeptidase [Bacillus cereus G9241], gi\|47553872\|gb\|EAL12242....	4.0E-95	[1..353]	[1..353]
gi\|89200835, gi\|... - gi\|89200835\|ref\|ZP_01179585.1\| Peptidase M24 [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|89151...	6.0E-95	[1..353]	[1..353]
gi\|228902716, gi... - gi\|228902716\|ref\|ZP_04066863.1\| Uncharacterized peptidase yqhT [Bacillus thuringiensis IBL 4222], gi... gi\|228792608, gi... - gi\|228967239\|ref\|ZP_04128275.1\| Uncharacterized peptidase yqhT [Bacillus thuringiensis serovar sotto... gi\|75761447, gi\|... - gi\|75761447\|ref\|ZP_00741414.1\| Xaa-Pro dipeptidase [Bacillus thuringiensis serovar israelensis ATCC ... gi\|218544274, gi... - gi\|218899362\|ref\|YP_002447773.1\| X-Pro dipeptidase [Bacillus cereus G9842], gi\|218544274\|gb\|ACK96668...	1.0E-94	[1..353]	[1..353]

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Predicted Domain #1

Region A:
Residues: [1-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKIERLRSA FDEAGIDGIL LTNEHSRRYM ANFTGTAGVV LISKKRAQFI TDFRYVEQAS  60
   61 KQAVGYEIVQ HAGLIIDEVA KQVKELGIQK LGFEQDTLTY SSYSAHKEAI DAEFIPTSGL 120
  121 VEKLRLIKTD SEIKILKEAA QIADAAFEHI LSFIRPGVSE IEVSNELEFF MRKQGATSSS 180
  181 FDIIVASGLR SALPHGVASE KVIETGDFVT LDFGAYYKGY CSDITRTIAV GEPSDKLKEI 240
  241 YNIVLEAQLR GVNGIKAGLT GREADALTRD YITEKGYGEY FGHSTGHGIG LEIHEAPGLA 300
  301 FRSDTVLEPG MAVTVEPGIY IPGIGGVRIE DDIIVTSEGN EVITKSPKEL IIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.30103
Match:	1pv9A
Description:	Prolidase from Pyrococcus furiosus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidase activity	2.76723095667188	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.32675126054468	bayes_pls_golite062009
hydrolase activity	1.32640177567297	bayes_pls_golite062009
exopeptidase activity	1.11241584879462	bayes_pls_golite062009
metallopeptidase activity	1.0610925051469	bayes_pls_golite062009
aminopeptidase activity	0.53115813873012	bayes_pls_golite062009
catalytic activity	0.51899181055614	bayes_pls_golite062009
metalloexopeptidase activity	0.0416763295703397	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: