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View Structure Prediction Details

Protein: gi|37926733, gi|...
Organism: Mus musculus
Length: 219 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37926733, gi|....

Description E-value Query
Range
Subject
Range
gi|18655521 - gi|18655521|pdb|1IQW|L Chain L, Crystal Structure Of The Fab Fragment Of The Mouse Anti- Human Fas A...
225.0 [0..1] [219..1]
gi|111606533 - gi|111606533|gb|ABH10631.1| humanized murine anti-VEEV antibody Hy4-26C light chain [synthetic const...
224.0 [0..1] [219..1]
gi|21410817 - gi|21410817|gb|AAH30814.1| IGKV1-5 protein [Homo sapiens]
223.0 [0..1] [219..21]

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Predicted Domain #1
Region A:
Residues: [1-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIVMTQAAPS VPVTPGESVS ISCRSSKSLL HSNGNTYLYW FLQRPGQSPQ LLIYRMSNLA  60
   61 SGVPDRFSGS GSGTAFTLRI SRVEAEDVGV YYCLQHLEYP FTFGAGTKLE LKRADAAPTV 120
  121 SIFPPSSEQL TSGGASVVCF LNNFYPKDIN VKWKIDGSER QNGVLNSWTD QDSKDSTYSM 180
  181 SSTLTLTKDE YERHNSYTCE ATHKTSTSPI VKSFNRNEC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.221849
Match: 1mh5A
Description: The Structure Of The Complex Of The Fab Fragment Of The Esterolytic Antibody MS6-164 and A Transition-State Analog
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
antigen binding 6.15874156332332 bayes_pls_golite062009
peptide antigen binding 3.64034637674979 bayes_pls_golite062009
binding 1.98262954718581 bayes_pls_golite062009
receptor activity 1.9202781107236 bayes_pls_golite062009
receptor binding 1.67130413402976 bayes_pls_golite062009
IgG binding 1.6222936767122 bayes_pls_golite062009
transmembrane receptor activity 1.50492718932189 bayes_pls_golite062009
signal transducer activity 1.11174153927545 bayes_pls_golite062009
molecular transducer activity 1.11174153927545 bayes_pls_golite062009
immunoglobulin receptor activity 1.06402558628866 bayes_pls_golite062009
protein binding 0.925738463571838 bayes_pls_golite062009
immunoglobulin binding 0.48272957113121 bayes_pls_golite062009
cytokine binding 0.372406716355349 bayes_pls_golite062009
MHC class II receptor activity 0.251167772391909 bayes_pls_golite062009
growth factor binding 0.0566162403218091 bayes_pls_golite062009

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