YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3659927, gi\|3...
Organism:	Escherichia coli
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3659927, gi|3....

Description	E-value	Query Range	Subject Range
gi\|49609574, gi\|... - gi\|50119048\|ref\|YP_048215.1\| PTS system, mannitol-specific IIABC component [Pectobacterium atrosepti...	158.0	[0..4]	[148..489]
gi\|238716078, gi... - gi\|77959635\|ref\|ZP_00823653.1\| COG2213: Phosphotransferase system, mannitol-specific IIBC component ...	157.0	[0..7]	[148..480]
gi\|77960734 - gi\|77960734\|ref\|ZP_00824593.1\| COG2213: Phosphotransferase system, mannitol-specific IIBC component ...	156.0	[0..7]	[148..480]
gi\|41584042, gi\|... - gi\|42519753\|ref\|NP_965683.1\| phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, f...	156.0	[0..1]	[148..1]
gi\|238787795, gi... - gi\|77973744\|ref\|ZP_00829289.1\| COG2213: Phosphotransferase system, mannitol-specific IIBC component ...	156.0	[0..7]	[148..480]
gi\|62182179, gi\|... - gi\|62182179\|ref\|YP_218596.1\| PTS family, mannitol-specific enzyme IIABC components [Salmonella enter...	155.0	[0..7]	[148..496]
gi\|238727554, gi... - gi\|77978090\|ref\|ZP_00833524.1\| COG2213: Phosphotransferase system, mannitol-specific IIBC component ...	154.0	[0..7]	[148..480]
gi\|197938947, gi... - gi\|198244431\|ref\|YP_002217646.1\| pts system mannitol-specific eiicba component [Salmonella enterica ... gi\|16504929, gi\|... - gi\|25287848\|pir\|\|AI0976 mannitol-specific enzyme II of phosphotransferase system [imported] - Salmon... gi\|197364504, gi... - gi\|197364504\|ref\|YP_002144141.1\| mannitol-specific enzyme II of phosphotransferase system [Salmonell... gi\|213650628 - gi\|213650628\|ref\|ZP_03380681.1\| pts system mannitol-specific eiicba component [Salmonella enterica s... gi\|213610022 - gi\|213610022\|ref\|ZP_03369848.1\| pts system mannitol-specific eiicba component [Salmonella enterica s... gi\|16762624 - gi\|16762624\|ref\|NP_458241.1\| mannitol-specific enzyme II of phosphotransferase system [Salmonella en... gi\|194449488, gi... - gi\|194449488\|ref\|YP_002047714.1\| pts system mannitol-specific eiicba component [Salmonella enterica ... gi\|194400974, gi... - gi\|194442311\|ref\|YP_002042933.1\| pts system mannitol-specific eiicba component [Salmonella enterica ... gi\|16766970, gi\|... - gi\|16766970\|ref\|NP_462585.1\| mannitol-specific enzyme IIABC component [Salmonella typhimurium LT2], ... gi\|197211207, gi... - gi\|197247504\|ref\|YP_002148616.1\| pts system mannitol-specific eiicba component [Salmonella enterica ... gi\|29139750, gi\|... - gi\|29144113\|ref\|NP_807455.1\| mannitol-specific enzyme II of phosphotransferase system [Salmonella en... gi\|194456379, gi... - gi\|194470015\|ref\|ZP_03075999.1\| pts system mannitol-specific eiicba component [Salmonella enterica s... gi\|56415577, gi\|... - gi\|56415577\|ref\|YP_152652.1\| mannitol-specific enzyme II of phosphotransferase system [Salmonella en... gi\|205338747, gi... - gi\|205338747\|gb\|EDZ25511.1\| pts system mannitol-specific eiicba component [Salmonella enterica subsp... lcl\|NC_016856.1_... - [gene=mtlA] [protein=mannitol-specific enzyme IIABC component] [protein_id=YP_005239923.1] [location... gi\|168232528, gi... - gi\|205333241\|gb\|EDZ20005.1\| pts system mannitol-specific eiicba component [Salmonella enterica subsp... gi\|168818485, gi... - gi\|205344403\|gb\|EDZ31167.1\| pts system mannitol-specific eiicba component [Salmonella enterica subsp... gi\|205350428, gi... - gi\|205350428\|gb\|EDZ37059.1\| pts system mannitol-specific eiicba component [Salmonella enterica subsp... gi\|161616759, gi... - gi\|161616759\|ref\|YP_001590724.1\| hypothetical protein SPAB_04578 [Salmonella enterica subsp. enteric... gi\|205330644, gi... - gi\|205330644\|gb\|EDZ17408.1\| pts system mannitol-specific eiicba component [Salmonella enterica subsp... gi\|205325653, gi... - gi\|205325653\|gb\|EDZ13492.1\| pts system mannitol-specific eiicba component [Salmonella enterica subsp... gi\|224470012, gi... - gi\|224585484\|ref\|YP_002639283.1\| mannitol-specific enzyme II of phosphotransferase system [Salmonell... gi\|214001133 - gi\|214001133\|ref\|ZP_03411868.1\| pts system mannitol-specific eiicba component [Salmonella enterica s...	154.0	[0..7]	[148..496]
gi\|51598203, gi\|... - gi\|51598203\|ref\|YP_072394.1\| PTS system, mannitol-specific IIABC component [Yersinia pseudotuberculo... gi\|169748822, gi... - gi\|170022288\|ref\|YP_001718793.1\| PTS system, mannitol-specific IIC subunit [Yersinia pseudotuberculo... gi\|153948113, gi... - gi\|153948113\|ref\|YP_001403071.1\| PTS system, mannitol-specific EIICBA component [Yersinia pseudotube... gi\|186700455, gi... - gi\|186897429\|ref\|YP_001874541.1\| PTS system, mannitol-specific IIC subunit [Yersinia pseudotuberculo... Q663V6\|Q663V6_YERPS - PTS system, mannitol-specific IIABC component - Yersinia pseudotuberculosis	154.0	[0..7]	[147..500]
gi\|229904396, gi... - gi\|229904396\|ref\|ZP_04519507.1\| PTS system, mannitol-specific IIABC component [Yersinia pestis Nepal... gi\|108809005, gi... - gi\|108809005\|ref\|YP_652921.1\| PTS system, mannitol-specific IIABC component [Yersinia pestis Antiqua... gi\|229691198, gi... - gi\|229841859\|ref\|ZP_04462015.1\| PTS system, mannitol-specific IIABC component [Yersinia pestis biova... gi\|229839775, gi... - gi\|229839775\|ref\|ZP_04459934.1\| PTS system, mannitol-specific IIABC component [Yersinia pestis biova... gi\|167055454, gi... - gi\|167425440\|ref\|ZP_02317193.1\| PTS system, mannitol-specific EIICBA component [Yersinia pestis biov... gi\|229700276, gi... - gi\|229896737\|ref\|ZP_04511901.1\| PTS system, mannitol-specific IIABC component [Yersinia pestis Pesto... gi\|167420952, gi... - gi\|167420952\|ref\|ZP_02312705.1\| PTS system, mannitol-specific EIICBA component [Yersinia pestis biov... gi\|167398446, gi... - gi\|167398446\|ref\|ZP_02303970.1\| PTS system, mannitol-specific EIICBA component [Yersinia pestis biov... gi\|150260992, gi... - gi\|150260992\|ref\|ZP_01917720.1\| PTS system, mannitol-specific IIABC component [Yersinia pestis CA88-... gi\|145597349, gi... - gi\|145597349\|ref\|YP_001161424.1\| PTS system, mannitol-specific IIABC component [Yersinia pestis Pest... gi\|162351382, gi... - gi\|162418567\|ref\|YP_001608090.1\| PTS system, mannitol-specific IIABC component [Yersinia pestis Ango... gi\|21961099, gi\|... - gi\|22127956\|ref\|NP_671379.1\| PTS system, mannitol-specific IIABC component [Yersinia pestis KIM], gi... gi\|25287849 - pir\|\|AF0494 protein-Npi-phosphohistidine-sugar phosphotransferase (EC 2.7.1.69) IIABC component [imp... gi\|115349661, gi... - gi\|218931050\|ref\|YP_002348925.1\| PTS system, mannitol-specific IIABC component [Yersinia pestis CO92... gi\|166213308, gi... - gi\|166213308\|ref\|ZP_02239343.1\| PTS system, mannitol-specific EIICBA component [Yersinia pestis biov... gi\|45443703, gi\|... - gi\|45443703\|ref\|NP_995242.1\| PTS system, mannitol-specific IIABC component [Yersinia pestis biovar M... gi\|165991411, gi... - gi\|166009489\|ref\|ZP_02230387.1\| PTS system, mannitol-specific EIICBA component [Yersinia pestis biov... gi\|165936930, gi... - gi\|165936930\|ref\|ZP_02225496.1\| PTS system, mannitol-specific EIICBA component [Yersinia pestis biov... gi\|165926179, gi... - gi\|165926179\|ref\|ZP_02222011.1\| PTS system, mannitol-specific EIICBA component [Yersinia pestis biov...	154.0	[0..7]	[147..500]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLFKLGAE NIFLGRKAAT KEEAIRFAGE QLVKGGYVEP EYVQAMLDRE KLTPTYLGES  60
   61 IAVPHGTVEA KDRVLKTGVV FCQYPEGVRF GEEEDDIARL VIGIAARNNE HIQVITSLTN 120
  121 ALDDESVIER LAHTTSVDEV LELLAGRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	1a3aA
Description:	Phosphotransferase IIa-mannitol
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	4.89047341597444	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	3.92377913213665	bayes_pls_golite062009
transporter activity	2.16741930408232	bayes_pls_golite062009
transmembrane transporter activity	2.05879816720019	bayes_pls_golite062009
active transmembrane transporter activity	1.87457143976439	bayes_pls_golite062009
substrate-specific transporter activity	1.82451780056478	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.7251575499811	bayes_pls_golite062009
binding	0.396676636991646	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.19707628828681	bayes_pls_golite062009
ion transmembrane transporter activity	0.12881601139602	bayes_pls_golite062009
anion transmembrane transporter activity	0.10209580008722	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: