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Protein Overview: gi|41584042, gi|...

General Information:
Name(s) found: gi|42519753 [NCBI NR]
gi|41584042 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|42519753|ref|NP_965683.1| phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, fructose specific [Lactobacillus johnsonii NCC 533] [NCBI NR]
  • gi|41584042|gb|AAS09649.1| phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, probable fructose specific [Lactobacillus johnsonii NCC 533] [NCBI NR]
    • Organism: Lactobacillus johnsonii NCC 533
    Length: 661 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIEDLLSPD LMIMDLKATT QEEAIKEMAD LEVKQGVVNN EEEFIKSIWA REKESTTGIG  60
   61 EGIAMPHARN KYINRAAVLF AKSPKGIDYK ALDGQPVHLF FMITAPAGAD NTHLQALAKL 120
  121 SSLLINPDVV NALKAATTPE EVIDIFKKAE AEKDAQDKAD AEKRKAEAAK EASKPASEQK 180
  181 PLIVGVTACI NGIAHTYMAQ EALIKAGKKL GVDVRIETNG SEGVKDKLTP EEIKRAKGVI 240
  241 IASDKKVDMP RFNGKELVMK PVVDGINHPK ELIEDILENK APIYHADSSA SSSDNDAKEK 300
  301 QGLWASIYKN LMSGISHMLP FVIGGGILMA ISFIVENYMA GGAKNPAFIF LNSAGNLAFA 360
  361 FMVPVLAAYI AESIGDLPAL MPGFVGGYMA AIVNGTNGLQ VNAQAHAVSP AGFLGGIAAG 420
  421 FIAGYMMIGL KKLFAKLPKS VEGMKPMLLY PILGLLFIAL IMFYIINPIF SSVNFAITHF 480
  481 LNSMGTGNLV ILTMILAGMM AIDMGGPFNK AAYVFASGAF ANDPHSATAA VMMAAVMVGG 540
  541 MVPPFATAIG TTFFKNRYTK EERRAGVSNW ILGFSFITEG AIPFAAADPG RVIPSCVIGS 600
  601 AVGGLLVGLW HIQVPAPHGG LWVSPLSNHI LLYFVATIVG SIVAGLIMSF WKKPISEDPD 660
  661 E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..163] PSI-BLAST 30.30103 Nitrogen regulatory bacterial protein IIa-ntr
    2 View Details [164..292] PSI-BLAST 23.0 No description for 2r48A was found.
    3 View Details [293..485] MSA 2.537992 View MSA. No confident structure predictions are available.
    4 View Details [486..661] MSA 10.545995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
    		•  4.89047341597444 bayes_pls_golite062009
  • anion transmembrane transporter activity
    		•  4.24001113213235 bayes_pls_golite062009
  • inorganic anion transmembrane transporter activity
    		•  3.94111218055933 bayes_pls_golite062009
  • carbohydrate transmembrane transporter activity
    		•  3.92377913213665 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  3.64568675122187 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.5059397756077 bayes_pls_golite062009
  • transporter activity
    		•  2.16741930408232 bayes_pls_golite062009
  • bicarbonate transmembrane transporter activity
    		•  2.067679569708 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.05879816720019 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.87457143976439 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.82451780056478 bayes_pls_golite062009
  • chloride transmembrane transporter activity
    		•  1.57532948941308 bayes_pls_golite062009
  • anion exchanger activity
    		•  1.57532948941308 bayes_pls_golite062009
  • anion:anion antiporter activity
    		•  1.07225541736305 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.789390286938302 bayes_pls_golite062009
  • catalytic activity
    		•  0.547925219495929 bayes_pls_golite062009
  • binding
    		•  0.396676636991646 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.19707628828681 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.191423093908067 bayes_pls_golite062009
    2
    Term Confidence Notes
  • protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
    		•  5.08041453921791 bayes_pls_golite062009
  • carbohydrate transmembrane transporter activity
    		•  4.49138214292642 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  3.13779788020777 bayes_pls_golite062009
  • fructose transmembrane transporter activity
    		•  2.02791322402201 bayes_pls_golite062009
  • sugar transmembrane transporter activity
    		•  1.77053981674308 bayes_pls_golite062009
  • transporter activity
    		•  1.6837050020547 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.5685227361887 bayes_pls_golite062009
  • monosaccharide transmembrane transporter activity
    		•  1.38987536600292 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.32293422112884 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.12964417923438 bayes_pls_golite062009
  • hexose transmembrane transporter activity
    		•  0.80355002679172 bayes_pls_golite062009
  • catalytic activity
    		•  0.676259875978821 bayes_pls_golite062009
  • binding
    		•  0.472595683811139 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.37663629577414 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.0296784994545702 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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