| Protein: | UBQ12_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 230 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBQ12_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
379.0 | [0..1] | [229..171] |
|
Region A: Residues: [1-63] |
1 11 21 31 41 51
| | | | | |
1 MQIFLKTLTG KTKVLEVESS DTIDNVKAKI QDIEGIPPDQ HRLIFAGKQL EDGRTLADYN 60
61 VQE
|
| Detection Method: |  |
| Confidence: | 16.045757 |
| Match: | 1gjzA |
| Description: | Ubiquitin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| small conjugating protein ligase activity | 7.96815122865454 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 7.5865326390755 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 6.96506647680367 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 5.87890364671564 | bayes_pls_golite062009 |
| structural constituent of ribosome | 5.80275625219016 | bayes_pls_golite062009 |
| structural molecule activity | 5.37716040292459 | bayes_pls_golite062009 |
| ligase activity | 2.98370000660434 | bayes_pls_golite062009 |
| protein binding | 2.9188688008729 | bayes_pls_golite062009 |
| binding | 2.786655943372 | bayes_pls_golite062009 |
| transcription regulator activity | 2.21955949922709 | bayes_pls_golite062009 |
| protein tag | 2.15059229834935 | bayes_pls_golite062009 |
| nucleic acid binding | 1.9984951714209 | bayes_pls_golite062009 |
| DNA binding | 1.86539227646379 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.20282717466582 | bayes_pls_golite062009 |
| receptor binding | 1.09091623056284 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.06193722939839 | bayes_pls_golite062009 |
| SUMO ligase activity | 0.80391127659342 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.62324312069889 | bayes_pls_golite062009 |
| hydrolase activity | 0.614233748923048 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.536856055841234 | bayes_pls_golite062009 |
| tubulin binding | 0.51378503121967 | bayes_pls_golite062009 |
| kinase activity | 0.506057697290914 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.410719674374641 | bayes_pls_golite062009 |
| RNA binding | 0.359926300264681 | bayes_pls_golite062009 |
| protein kinase activity | 0.325253662829604 | bayes_pls_golite062009 |
| peptidase inhibitor activity | 0.27796076785312 | bayes_pls_golite062009 |
| microtubule binding | 0.24163565725263 | bayes_pls_golite062009 |
| enzyme binding | 0.240262781026149 | bayes_pls_golite062009 |
| endopeptidase inhibitor activity | 0.189489510504993 | bayes_pls_golite062009 |
|
Region A: Residues: [64-151] |
1 11 21 31 41 51
| | | | | |
1 DSTLHLLLRF RGGMQIFVKT LTGKTITLEV ESSDTIDNLK AKIQDKEGIP PDQQRLIFAG 60
61 KQLEDGRTLA DYNIQKESTL HLVLRLRG
|
| Detection Method: | |
| Confidence: | 14.154902 |
| Match: | 1oqyA |
| Description: | Structure of the DNA repair protein hHR23a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| small conjugating protein ligase activity | 7.96815122865454 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 7.5865326390755 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 6.96506647680367 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 5.87890364671564 | bayes_pls_golite062009 |
| structural constituent of ribosome | 5.80275625219016 | bayes_pls_golite062009 |
| structural molecule activity | 5.37716040292459 | bayes_pls_golite062009 |
| ligase activity | 2.98370000660434 | bayes_pls_golite062009 |
| protein binding | 2.9188688008729 | bayes_pls_golite062009 |
| binding | 2.786655943372 | bayes_pls_golite062009 |
| transcription regulator activity | 2.21955949922709 | bayes_pls_golite062009 |
| protein tag | 2.15059229834935 | bayes_pls_golite062009 |
| nucleic acid binding | 1.9984951714209 | bayes_pls_golite062009 |
| DNA binding | 1.86539227646379 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.20282717466582 | bayes_pls_golite062009 |
| receptor binding | 1.09091623056284 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.06193722939839 | bayes_pls_golite062009 |
| SUMO ligase activity | 0.80391127659342 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.62324312069889 | bayes_pls_golite062009 |
| hydrolase activity | 0.614233748923048 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.536856055841234 | bayes_pls_golite062009 |
| tubulin binding | 0.51378503121967 | bayes_pls_golite062009 |
| kinase activity | 0.506057697290914 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.410719674374641 | bayes_pls_golite062009 |
| RNA binding | 0.359926300264681 | bayes_pls_golite062009 |
| protein kinase activity | 0.325253662829604 | bayes_pls_golite062009 |
| peptidase inhibitor activity | 0.27796076785312 | bayes_pls_golite062009 |
| microtubule binding | 0.24163565725263 | bayes_pls_golite062009 |
| enzyme binding | 0.240262781026149 | bayes_pls_golite062009 |
| endopeptidase inhibitor activity | 0.189489510504993 | bayes_pls_golite062009 |
|
Region A: Residues: [152-230] |
1 11 21 31 41 51
| | | | | |
1 GMQIFVKTLT GKTITLEVES SDTIDNVKAK IQDKEGISPD QQRLIFAGKQ HEDGRTLADY 60
61 NIQKESTLHL VLRLRGGSF
|
| Detection Method: | |
| Confidence: | 29.0 |
| Match: | 2ojrA |
| Description: | No description for 2ojrA was found. |
