YRC Public Data Repository - Protein Structure Prediction

Protein:	SHGR2_ARATH
Organism:	Arabidopsis thaliana
Length:	933 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SHGR2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|50940417, gi\|... - gi\|51964620\|ref\|XP_507094.1\| PREDICTED P0007D08.37 gene product [Oryza sativa (japonica cultivar-gro...	658.0	[0..16]	[932..31]
gi\|114633054 - gi\|114633054\|ref\|XP_508076.2\| PREDICTED: Sec23-interacting protein p125 isoform 2 [Pan troglodytes]	613.0	[0..6]	[878..176]
gi\|55730144 - gi\|55730144\|emb\|CAH91796.1\| hypothetical protein [Pongo abelii] gi\|197101457 - gi\|197101457\|ref\|NP_001127463.1\| SEC23 interacting protein [Pongo abelii]	609.0	[0..6]	[878..205]
SEC23IP - SEC23 interacting protein	602.0	[0..6]	[878..176]
gi\|73998720 - gi\|73998720\|ref\|XP_535037.2\| PREDICTED: similar to SEC23-interacting protein (p125) isoform 2 [Canis...	602.0	[0..6]	[878..176]
gi\|109090759 - gi\|109090759\|ref\|XP_001100615.1\| PREDICTED: Sec23-interacting protein p125 isoform 3 [Macaca mulatta...	599.0	[0..6]	[878..176]
gi\|109462958, gi... - gi\|198442887\|ref\|NP_001128331.1\| SEC23 interacting protein [Rattus norvegicus], gi\|149067610\|gb\|EDM1...	596.0	[0..6]	[878..173]
S23IP_MOUSE - SEC23-interacting protein OS=Mus musculus GN=Sec23ip PE=1 SV=2	591.0	[0..6]	[878..172]
gi\|76673295 - gi\|76673295\|ref\|XP_878339.1\| PREDICTED: similar to SEC23-interacting protein (p125) isoform 6 [Bos t...	589.0	[0..6]	[878..176]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDRETHLGT REVNETSPDL LKNTPSNIAR LEDVIEQCHG RQKYLAQTRS PSDGSDVRWY  60
   61 FCKVPLAENE LAASVPRTDV VGKSEYFRFG MRDSLAIEAS FLQREDELLS LWWKEYAECS 120
  121 EGP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [124-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLQVNSKKKS IETPSEASVS SSLYEVEEER VGVPVKGGLY EVDLVRRHCF PVYWNGDNRR  60
   61 VLRGHWFARK GGLDWLPIPE TVSEQLEVAY RNKVWRRRSF QP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [226-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGLFAARIDL QGSSLGLHAL FTGEDDTWEA WLNVDPSGFS GIVGYTGNGI KLRRGYAGSY  60
   61 SPKPTQEELR QQKEEEMDDY CSQVPV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [312-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHLVFMVHGI GQKGEKSNLV DDVGNFRQIT AALAERHLTS HQLSTQRVLF IPCQWRKGLK  60
   61 LSGEAAVDKC TLDGVRRFRE MLSATVHDVL YYMSPIYCQA IIDSVSKQLN RLYLKFLKRN 120
  121 PDYVGKISIY GHSLGSVLSY DILCH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [457-671]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QHNLSSPFPM DSVYKKFFPD EESPPTPAKA DKPCSSHPSS NFEPEKSDQL NNPEKITGQD  60
   61 NNTMAKEPTV LEHHDVIQED PSLISDSVVA NVGLERRGGQ EDDHHDSSGA ISSQDVPDGA 120
  121 DCRTPDSPSC SQEQSWDKES VNSNNEERIK LLQDEVNSLR SKVAQLLSEN ARILSDEKAK 180
  181 TSVAPKELNN EKVQTEDADA PTSFTPFIKY QKLEF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [672-933]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVDTFFAVGS PLGVFLALRN IRLGIGKGKD YWEEENAIEE MPACRRMFNI FHPYDPVAYR  60
   61 VEPLVCKEYL PERPVIIPYH RGGKRLHIGL QDFREDFAAR SQRIMNHFDS VRTRVLTICQ 120
  121 SKSADNLDEM EETDDEKDDR SYGSLMIERL TGTRDGRIDH MLQEKTFEHP YLQAIGAHTN 180
  181 YWRDQDTALF IIKHLYRELP DGPNSPTEST EGDDSPKDSS RPHSWIDRRE ADYDDEELPL 240
  241 TFSDKQITRS FSAEAKKYLK KP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	35.221849
Match:	PF02862.9
Description:	No description for PF02862.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits