YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|14278249
Organism:	Escherichia coli
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|14278249.

Description	E-value	Query Range	Subject Range
gi\|148138 - gi\|148138\|gb\|AAA24736.1\| ATP synthase gamma subunit [Escherichia coli]	302.0	[0..1]	[230..19]
ATPG_ECO24 - ATP synthase gamma chain OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=atpG PE=3 SV=1 gi\|170766612, gi... - gi\|170766612\|ref\|ZP_02901065.1\| ATP synthase F1, gamma subunit [Escherichia albertii TW07627], gi\|17... ATPG_ECO55 - ATP synthase gamma chain OS=Escherichia coli (strain 55989 / EAEC) GN=atpG PE=3 SV=1	301.0	[0..1]	[230..19]
gi\|194420428, gi... - gi\|83571335\|ref\|ZP_00922775.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Shigella dysenteriae ... gi\|194435837, gi... - gi\|83588402\|ref\|ZP_00927026.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli 101-... ATPG_SHIB3 - ATP synthase gamma chain OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=atpG PE=3 SV... ATPG_ECOHS - ATP synthase gamma chain OS=Escherichia coli O9:H4 (strain HS) GN=atpG PE=3 SV=1 gi\|75210657, gi\|... - gi\|75210657\|ref\|ZP_00710798.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli B171... gi\|190904116, gi... - gi\|75230994\|ref\|ZP_00717429.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli B7A]... gi\|192957494, gi... - gi\|75236465\|ref\|ZP_00720561.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli E110... gi\|191170529, gi... - gi\|75242479\|ref\|ZP_00726223.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli F11]... ATPG_SHIFL - ATP synthase gamma chain OS=Shigella flexneri GN=atpG PE=3 SV=1 gi\|24054295, gi\|... - gi\|24115036\|ref\|NP_709546.1\| F0F1 ATP synthase subunit gamma [Shigella flexneri 2a str. 301], gi\|240... ATPG_ECOL6 - ATP synthase gamma chain OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=atpG PE=3... gi\|30064962, gi\|... - gi\|30064962\|ref\|NP_839133.1\| F0F1 ATP synthase subunit gamma [Shigella flexneri 2a str. 2457T], gi\|3... ATPG_ECO57 - ATP synthase gamma chain OS=Escherichia coli O157:H7 GN=atpG PE=3 SV=1 EG10104 - F1 sector of membrane-bound ATP synthase, gamma subunit / ATP synthase subunit gamma, membrane-bound... gi\|15804333, gi\|... - gi\|15804333\|ref\|NP_290372.1\| F0F1 ATP synthase subunit gamma [Escherichia coli O157:H7 EDL933], gi\|1... ATPG_ESCF3 - ATP synthase gamma chain OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=... ATPG_ECO8A - ATP synthase gamma chain OS=Escherichia coli O8 (strain IAI1) GN=atpG PE=3 SV=1 ATPG_ECO45 - ATP synthase gamma chain OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=atpG PE=3 SV=1 ATPG_ECO81 - ATP synthase gamma chain OS=Escherichia coli O81 (strain ED1a) GN=atpG PE=3 SV=1 sp\|B7UMJ8\|ATPG_ECO27 - ATP synthase gamma chain OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=atpG PE=3 SV=1 ATPG_ECO7I - ATP synthase gamma chain OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=atpG PE=3 SV=1 ATPG_ECOLU - ATP synthase gamma chain OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=atpG PE=3 SV=1 gi\|195936360 - gi\|195936360\|ref\|ZP_03081742.1\| F0F1 ATP synthase subunit gamma [Escherichia coli O157:H7 str. EC402... gi\|208727153, gi... - gi\|208807352\|ref\|ZP_03249689.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4206... gi\|208812722, gi... - gi\|208812722\|ref\|ZP_03254051.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4045... gi\|208741481, gi... - gi\|208821358\|ref\|ZP_03261678.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4042... ATPG_ECO5E - ATP synthase gamma chain OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=atpG PE=3 SV=1 gi\|254795739, gi... - gi\|254795739\|ref\|YP_003080576.1\| F1 sector of membrane-bound ATP synthase, gamma subunit [Escherichi... ATPG_ECOSE - ATP synthase gamma chain OS=Escherichia coli (strain SE11) GN=atpG PE=3 SV=1 gi\|254163685, gi... - gi\|254163685\|ref\|YP_003046793.1\| F0F1 ATP synthase subunit gamma [Escherichia coli B str. REL606], g... ATPG_ECO27 - ATP synthase gamma chain OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=atpG PE=3 SV=1 gi\|254038952, gi... - gi\|254038952\|ref\|ZP_04873004.1\| ATP synthase F1 [Escherichia sp. 1_1_43], gi\|226838917\|gb\|EEH70944.1... gi\|217322161, gi... - gi\|217325940\|ref\|ZP_03442024.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. TW1458... gi\|253326676, gi... - gi\|254290435\|ref\|YP_003056183.1\| F0F1 ATP synthase subunit gamma [Escherichia coli BL21(DE3)], gi\|25... gi\|251786998, gi... - gi\|251786998\|ref\|YP_003001302.1\| hypothetical protein B21_03561 [Escherichia coli BL21], gi\|24237927... ATPG_ECOBW - ATP synthase gamma chain OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=atpG PE=3 SV=1 gi\|226902798, gi... - gi\|237703534\|ref\|ZP_04534015.1\| membrane-bound ATP synthase F1 sector gamma-subunit [Escherichia sp.... gi\|227839233, gi... - gi\|227883955\|ref\|ZP_04001760.1\| F0F1 ATP synthase subunit gamma [Escherichia coli 83972], gi\|2278392... EG10104 - F1 sector of membrane-bound ATP synthase, gamma subunit / ATP synthase subunit gamma, membrane-bound... ATPG_ECOL6 - ATP synthase gamma chain OS=Escherichia coli O6 GN=atpG PE=3 SV=1 ATPG_ECOLI - ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1 sector gamma subunit) - Escherichia coli gi\|189369484, gi... - gi\|189369484\|gb\|EDU87900.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4501], g... gi\|168766233, gi... - gi\|189364469\|gb\|EDU82888.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4486], g... ATPG_ECOUT - ATP synthase gamma chain OS=Escherichia coli (strain UTI89 / UPEC) GN=atpG PE=3 SV=1 gi\|187771442, gi... - gi\|187771442\|gb\|EDU35286.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4196], g... gi\|15833929, gi\|... - gi\|15833929\|ref\|NP_312702.1\| F0F1 ATP synthase subunit gamma [Escherichia coli O157:H7 str. Sakai], ... gi\|168779968, gi... - gi\|189002320\|gb\|EDU71306.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4076], g... gi\|168786576, gi... - gi\|189373262\|gb\|EDU91678.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC869], gi... gi\|168798781, gi... - gi\|189378702\|gb\|EDU97118.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC508], gi... ATPG_ECODH - ATP synthase gamma chain OS=Escherichia coli (strain K12 / DH10B) GN=atpG PE=3 SV=1 ATPG_ECOSM - ATP synthase gamma chain OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=atpG PE=3 SV=1 ATPG_ECOL5 - ATP synthase gamma chain OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=atpG PE=3 SV=1 ATPG_SHIF8 - ATP synthase gamma chain OS=Shigella flexneri serotype 5b (strain 8401) GN=atpG PE=3 SV=1 ATPG_ECOK1 - ATP synthase gamma chain OS=Escherichia coli O1:K1 / APEC GN=atpG PE=3 SV=1 gi\|124530053, gi... - gi\|124530053\|ref\|ZP_01700836.1\| ATP synthase F1, gamma subunit [Escherichia coli B], gi\|124499458\|gb... gi\|168748537, gi... - gi\|188016989\|gb\|EDU55111.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4113], g... gi\|168753635, gi... - gi\|189359205\|gb\|EDU77624.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4401], g... ATPG_ECOLC - ATP synthase gamma chain OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=atpG PE=3 SV=... gi\|192930532, gi... - gi\|75258272\|ref\|ZP_00729720.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli E22]... gi\|188493986, gi... - gi\|75514201\|ref\|ZP_00736509.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli 5363... ATPG_SHIDS - ATP synthase gamma chain OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=atpG PE=3 SV=1 gi\|85676305, gi\|... - gi\|89110274\|ref\|AP_004054.1\| F1 sector of membrane-bound ATP synthase, gamma subunit [Escherichia co...	301.0	[0..1]	[230..19]
gi\|6625702 - gi\|6625702\|gb\|AAF19361.1\|AF188265_7 ATP synthase subunit gamma [Salmonella typhimurium] gi\|6625702\|gb\|AA... - ATP synthase subunit gamma [Salmonella typhimurium]	301.0	[0..1]	[230..19]
ATPG_SHIBS - ATP synthase gamma chain OS=Shigella boydii serotype 4 (strain Sb227) GN=atpG PE=3 SV=1	299.0	[0..1]	[230..19]
ATPG_SHISS - ATP synthase gamma chain OS=Shigella sonnei (strain Ss046) GN=atpG PE=3 SV=1	299.0	[0..1]	[230..19]
ATPG_SALPA - ATP synthase gamma chain OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=atpG PE=3 SV=1 ATPG_SALPA - ATP synthase gamma chain OS=Salmonella paratyphi A GN=atpG PE=3 SV=1 gi\|197263603, gi... - gi\|197263603\|ref\|ZP_03163677.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica ... ATPG_SALPK - ATP synthase gamma chain OS=Salmonella paratyphi A (strain AKU_12601) GN=atpG PE=3 SV=1	298.0	[0..1]	[230..19]
gi\|167554379, gi... - gi\|205321437\|gb\|EDZ09276.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero... gi\|205327338, gi... - gi\|205327338\|gb\|EDZ14102.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero... gi\|238913119 - gi\|238913119\|ref\|ZP_04656956.1\| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica... ATPG_SALTY - ATP synthase gamma chain OS=Salmonella typhimurium GN=atpG PE=2 SV=1 gi\|200389152, gi... - gi\|200389152\|ref\|ZP_03215764.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica ... gi\|204322239, gi... - gi\|204928806\|ref\|ZP_03220005.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica ... ATPG_SALEP - ATP synthase gamma chain OS=Salmonella enteritidis PT4 (strain P125109) GN=atpG PE=3 SV=1 ATPG_SALPC - ATP synthase gamma chain OS=Salmonella paratyphi C (strain RKS4594) GN=atpG PE=3 SV=1 gi\|194469716, gi... - gi\|194469716\|ref\|ZP_03075700.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica ... ATPG_SALCH - ATP synthase gamma chain OS=Salmonella choleraesuis GN=atpG PE=3 SV=1 ATPG_SALSV - ATP synthase gamma chain OS=Salmonella schwarzengrund (strain CVM19633) GN=atpG PE=3 SV=1 ATPG_SALA4 - ATP synthase gamma chain OS=Salmonella agona (strain SL483) GN=atpG PE=3 SV=1 ATPG_SALDC - ATP synthase gamma chain OS=Salmonella dublin (strain CT_02021853) GN=atpG PE=3 SV=1 gi\|168464799, gi... - gi\|195632150\|gb\|EDX50634.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero... gi\|205340521, gi... - gi\|205340521\|gb\|EDZ27285.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero... ATPG_SALNS - ATP synthase gamma chain OS=Salmonella newport (strain SL254) GN=atpG PE=3 SV=1 ATPG_SALHS - ATP synthase gamma chain OS=Salmonella heidelberg (strain SL476) GN=atpG PE=3 SV=1 gi\|205331686, gi... - gi\|205331686\|gb\|EDZ18450.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero... gi\|168239810, gi... - gi\|197287556\|gb\|EDY26949.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero... gi\|168245315, gi... - gi\|205335969\|gb\|EDZ22733.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero... gi\|168263238, gi... - gi\|205348251\|gb\|EDZ34882.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero... ATPG_SALPB - ATP synthase gamma chain OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=atpG PE=3 SV=1 ATPG_SALPB - ATP synthase gamma chain OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=atpG PE=3 SV=1 ATPG_SALTY - ATP synthase gamma chain OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=atpG PE=... ATPG_SALCH - ATP synthase gamma chain OS=Salmonella choleraesuis (strain SC-B67) GN=atpG PE=3 SV=1 ATPG_SALTY - ATP synthase gamma chain OS=Salmonella typhimurium GN=atpG PE=2 SV=1 ATPG_SALCH - ATP synthase gamma chain OS=Salmonella choleraesuis GN=atpG PE=3 SV=1 lcl\|NC_016856.1_... - [gene=atpG] [protein=F0F1 ATP synthase subunit gamma] [protein_id=YP_005240134.1] [location=compleme...	298.0	[0..1]	[230..19]
gi\|77961817, gi\|... - gi\|77961817\|ref\|ZP_00825647.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Yersinia mollaretii A...	298.0	[0..1]	[230..19]
gi\|238787863, gi... - gi\|77973801\|ref\|ZP_00829346.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Yersinia frederikseni...	298.0	[0..1]	[230..19]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KITKAMEMVA ASKMRKSQDR MAASRPYAET MRKVIGHLAH GNLEYKHPYL EDRDVKRVGY  60
   61 LVVSTDRGLC GGLNINLFKK LLAEMKTWTD KGVQCDLAMI GSKGVSFFNS VGGNVVAQVT 120
  121 GMGDNPSLSE LIGPVKVMLQ AYDEGRLDKL YIVSNKFINT MSQVPTISQL LPLPASDDDD 180
  181 LKHKSWDYLY EPDPKALLDT LLRRYVESQV YQGVVENLAS EQAARMVAMK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.30103
Match:	1fs0G
Description:	ATP synthase (F1-ATPase), gamma subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism	15.1137831131288	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	13.4145652211868	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	11.6641947022993	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	10.5487930833633	bayes_pls_golite062009
cation transmembrane transporter activity	6.80604482262055	bayes_pls_golite062009
ion transmembrane transporter activity	6.69705984340533	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	6.26502594800359	bayes_pls_golite062009
proton-transporting ATPase activity, rotational mechanism	5.63110240369142	bayes_pls_golite062009
transporter activity	4.45226670606147	bayes_pls_golite062009
hydrogen-exporting ATPase activity, phosphorylative mechanism	4.41868118040901	bayes_pls_golite062009
substrate-specific transporter activity	4.39356148903647	bayes_pls_golite062009
transmembrane transporter activity	4.37099130240158	bayes_pls_golite062009
cation-transporting ATPase activity	3.59230188331019	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.90203817584499	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.06444952929525	bayes_pls_golite062009
pyrophosphatase activity	0.999037106125156	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.982260922227037	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.979897673854905	bayes_pls_golite062009
ATPase activity	0.97716527277771	bayes_pls_golite062009
primary active transmembrane transporter activity	0.832120661263195	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.826276552217418	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.799415003044834	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.796014711689645	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.795885962810984	bayes_pls_golite062009
active transmembrane transporter activity	0.786890420776467	bayes_pls_golite062009
binding	0.645280172931785	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	0.549067982072581	bayes_pls_golite062009
ATPase activity, coupled	0.330850590075407	bayes_pls_golite062009
hydrolase activity	0.0543843083790869	bayes_pls_golite062009
protein binding	0.0300107238451729	bayes_pls_golite062009
catalytic activity	0.0130900138976991	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: