From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.718098490085] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
MSB2 |
|
|
|
STE3 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
integral to plasma membrane | 2.0514E-5 | 2 | 29 | 2 | 6292 |
intrinsic to plasma membrane | 2.6678E-5 | 2 | 33 | 2 | 6292 |
plasma membrane part | 8.0641E-5 | 2 | 57 | 2 | 6292 |
integral to membrane | 1.6363E-3 | 2 | 255 | 2 | 6292 |
intrinsic to membrane | 1.7276E-3 | 2 | 262 | 2 | 6292 |
plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
signal transduction | 1.1516E-3 | 2 | 214 | 2 | 6292 |
signaling process | 1.1841E-3 | 2 | 217 | 2 | 6292 |
signal transmission | 1.1841E-3 | 2 | 217 | 2 | 6292 |
signaling | 1.598E-3 | 2 | 252 | 2 | 6292 |
signal transduction during filamentous growth | 2.5415E-3 | 2 | 8 | 1 | 6292 |
pheromone-dependent signal transduction involved in conjugation with cellular fusion | 8.5646E-3 | 2 | 27 | 1 | 6292 |
regulation of conjugation with cellular fusion by signal transduction | 8.5646E-3 | 2 | 27 | 1 | 6292 |
G-protein coupled receptor protein signaling pathway | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
transmembrane receptor activity | 2.779E-6 | 2 | 11 | 2 | 6292 |
receptor activity | 4.5979E-6 | 2 | 14 | 2 | 6292 |
molecular transducer activity | 1.5966E-4 | 2 | 80 | 2 | 6292 |
signal transducer activity | 1.5966E-4 | 2 | 80 | 2 | 6292 |
mating-type a-factor pheromone receptor activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
pheromone receptor activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
mating-type factor pheromone receptor activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
G-protein coupled receptor activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
osmosensor activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |