| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.737282014362] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| SNF5 |
|
|
|
| TFB5 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| holo TFIIH complex | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| SWI/SNF-type complex | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| SWI/SNF complex | 4.1283E-3 | 2 | 13 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| DNA repair | 9.2646E-4 | 2 | 192 | 2 | 6292 |
| response to DNA damage stimulus | 1.4011E-3 | 2 | 236 | 2 | 6292 |
| cellular response to stress | 2.1173E-3 | 2 | 290 | 2 | 6292 |
| cellular response to stimulus | 3.6193E-3 | 2 | 379 | 2 | 6292 |
| response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
| DNA metabolic process | 8.631E-3 | 2 | 585 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| general RNA polymerase II transcription factor activity | 1.0186E-4 | 2 | 64 | 2 | 6292 |
| RNA polymerase II transcription factor activity | 4.2367E-4 | 2 | 130 | 2 | 6292 |
| transcription regulator activity | 2.8947E-3 | 2 | 339 | 2 | 6292 |