| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.792820555994] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| FTH1 |
|
|
|
| PMC1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| fungal-type vacuole membrane | 1.3647E-4 | 2 | 74 | 2 | 6292 |
| vacuolar membrane | 3.1973E-4 | 2 | 113 | 2 | 6292 |
| vacuolar part | 3.6682E-4 | 2 | 121 | 2 | 6292 |
| fungal-type vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
| lytic vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
| storage vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
| vacuole | 1.0983E-3 | 2 | 209 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| di-, tri-valent inorganic cation transport | 2.5061E-5 | 2 | 32 | 2 | 6292 |
| metal ion transport | 8.3521E-5 | 2 | 58 | 2 | 6292 |
| cation transport | 2.256E-4 | 2 | 95 | 2 | 6292 |
| ion transport | 3.6076E-4 | 2 | 120 | 2 | 6292 |
| high-affinity iron ion transport | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| calcium ion transport | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| iron ion transmembrane transport | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| calcium ion homeostasis | 2.859E-3 | 2 | 9 | 1 | 6292 |
| cellular calcium ion homeostasis | 2.859E-3 | 2 | 9 | 1 | 6292 |
| divalent metal ion transport | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| iron ion transport | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| cellular metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.