From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.802919435706] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
Noc4p-Nop14p complex | 5.0527E-8 | 2 | 2 | 2 | 6292 |
Noc complex | 5.0527E-7 | 2 | 5 | 2 | 6292 |
preribosome, small subunit precursor | 7.579E-7 | 2 | 6 | 2 | 6292 |
90S preribosome | 6.8716E-6 | 2 | 17 | 2 | 6292 |
preribosome | 2.8346E-5 | 2 | 34 | 2 | 6292 |
nucleolar part | 5.0022E-5 | 2 | 45 | 2 | 6292 |
small nucleolar ribonucleoprotein complex | 1.2915E-4 | 2 | 72 | 2 | 6292 |
nuclear outer membrane | 1.8468E-4 | 2 | 86 | 2 | 6292 |
nuclear membrane | 2.3525E-4 | 2 | 97 | 2 | 6292 |
outer membrane | 7.9595E-4 | 2 | 178 | 2 | 6292 |
organelle outer membrane | 7.9595E-4 | 2 | 178 | 2 | 6292 |
nuclear envelope | 9.9543E-4 | 2 | 199 | 2 | 6292 |
nucleolus | 1.1194E-3 | 2 | 211 | 2 | 6292 |
nuclear membrane-endoplasmic reticulum network | 1.3539E-3 | 2 | 232 | 2 | 6292 |
endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
ribonucleoprotein complex | 6.6615E-3 | 2 | 514 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
ribosomal small subunit biogenesis | 1.6421E-5 | 2 | 26 | 2 | 6292 |
ribosome biogenesis | 3.0157E-3 | 2 | 346 | 2 | 6292 |
ribonucleoprotein complex biogenesis | 3.5243E-3 | 2 | 374 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
snoRNA binding | 9.8303E-3 | 2 | 31 | 1 | 6292 |