| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.865880299866] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| FRS1 |
|
|
|
| GUS1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| phenylalanine-tRNA ligase complex | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| methionyl glutamyl tRNA synthetase complex | 1.2712E-3 | 2 | 4 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| tRNA aminoacylation for protein translation | 2.6678E-5 | 2 | 33 | 2 | 6292 |
| tRNA aminoacylation | 2.6678E-5 | 2 | 33 | 2 | 6292 |
| amino acid activation | 2.6678E-5 | 2 | 33 | 2 | 6292 |
| tRNA metabolic process | 3.6076E-4 | 2 | 120 | 2 | 6292 |
| phenylalanyl-tRNA aminoacylation | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| glutamyl-tRNA aminoacylation | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| cellular amino acid metabolic process | 9.9543E-4 | 2 | 199 | 2 | 6292 |
| cellular amine metabolic process | 1.2395E-3 | 2 | 222 | 2 | 6292 |
| amine metabolic process | 1.4856E-3 | 2 | 243 | 2 | 6292 |
| cellular amino acid and derivative metabolic process | 1.4856E-3 | 2 | 243 | 2 | 6292 |
| ncRNA metabolic process | 1.6621E-3 | 2 | 257 | 2 | 6292 |
| organic acid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
| oxoacid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
| carboxylic acid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
| cellular ketone metabolic process | 3.0157E-3 | 2 | 346 | 2 | 6292 |
| translation | 3.5621E-3 | 2 | 376 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ligase activity, forming aminoacyl-tRNA and related compounds | 3.552E-5 | 2 | 38 | 2 | 6292 |
| aminoacyl-tRNA ligase activity | 3.552E-5 | 2 | 38 | 2 | 6292 |
| ligase activity, forming carbon-oxygen bonds | 3.552E-5 | 2 | 38 | 2 | 6292 |
| ligase activity | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| glutamate-tRNA ligase activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| phenylalanine-tRNA ligase activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |