| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.9385568198] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| LHS1 |
|
|
|
| SCJ1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| endoplasmic reticulum lumen | 1.4147E-6 | 2 | 8 | 2 | 6292 |
| endoplasmic reticulum part | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| subsynaptic reticulum | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| endoplasmic reticulum | 3.3381E-3 | 2 | 364 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| response to unfolded protein | 9.6001E-6 | 2 | 20 | 2 | 6292 |
| response to biotic stimulus | 9.6001E-6 | 2 | 20 | 2 | 6292 |
| response to protein stimulus | 9.6001E-6 | 2 | 20 | 2 | 6292 |
| response to organic substance | 4.7071E-4 | 2 | 137 | 2 | 6292 |
| cellular response to biotic stimulus | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| cellular response to unfolded protein | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| cellular response to protein stimulus | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| response to endoplasmic reticulum stress | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| ER-nucleus signaling pathway | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| endoplasmic reticulum unfolded protein response | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| response to chemical stimulus | 3.6769E-3 | 2 | 382 | 2 | 6292 |
| response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
| cellular response to organic substance | 6.3477E-3 | 2 | 20 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| chaperone binding | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| protein binding | 9.4468E-3 | 2 | 612 | 2 | 6292 |