| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.03533755739] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| GLO3 |
|
|
|
| SEC28 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| COPI coated vesicle membrane | 1.819E-6 | 2 | 9 | 2 | 6292 |
| COPI vesicle coat | 1.819E-6 | 2 | 9 | 2 | 6292 |
| Golgi-associated vesicle membrane | 6.0632E-6 | 2 | 16 | 2 | 6292 |
| COPI-coated vesicle | 1.0611E-5 | 2 | 21 | 2 | 6292 |
| vesicle coat | 2.8346E-5 | 2 | 34 | 2 | 6292 |
| coated vesicle membrane | 3.0063E-5 | 2 | 35 | 2 | 6292 |
| cytoplasmic vesicle membrane | 3.0063E-5 | 2 | 35 | 2 | 6292 |
| vesicle membrane | 3.0063E-5 | 2 | 35 | 2 | 6292 |
| membrane coat | 3.552E-5 | 2 | 38 | 2 | 6292 |
| coated membrane | 3.552E-5 | 2 | 38 | 2 | 6292 |
| cytoplasmic vesicle part | 3.744E-5 | 2 | 39 | 2 | 6292 |
| Golgi-associated vesicle | 3.9411E-5 | 2 | 40 | 2 | 6292 |
| Golgi membrane | 5.9419E-5 | 2 | 49 | 2 | 6292 |
| coated vesicle | 1.7194E-4 | 2 | 83 | 2 | 6292 |
| cytoplasmic vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
| membrane-bounded vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
| cytoplasmic membrane-bounded vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
| vesicle | 3.0291E-4 | 2 | 110 | 2 | 6292 |
| Golgi apparatus part | 3.5475E-4 | 2 | 119 | 2 | 6292 |
| ER-Golgi intermediate compartment | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
| endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| vesicle coating | 3.0316E-7 | 2 | 4 | 2 | 6292 |
| membrane budding | 5.0527E-7 | 2 | 5 | 2 | 6292 |
| vesicle organization | 5.2295E-5 | 2 | 46 | 2 | 6292 |
| ER to Golgi vesicle-mediated transport | 1.7194E-4 | 2 | 83 | 2 | 6292 |
| Golgi transport vesicle coating | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| COPI coating of Golgi vesicle | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| vesicle targeting, to, from or within Golgi | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| Golgi vesicle budding | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| establishment of vesicle localization | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| vesicle targeting | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| Golgi vesicle transport | 7.0879E-4 | 2 | 168 | 2 | 6292 |
| membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
| cellular membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
| vesicle localization | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
| intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
| retrograde vesicle-mediated transport, Golgi to ER | 8.248E-3 | 2 | 26 | 1 | 6292 |
| establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ARF GTPase activator activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |