From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.0749559403] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
actin cytoskeleton | 1.8038E-4 | 2 | 85 | 2 | 6292 |
cell cortex part | 2.304E-4 | 2 | 96 | 2 | 6292 |
cell cortex | 2.974E-4 | 2 | 109 | 2 | 6292 |
cytoskeletal part | 1.0156E-3 | 2 | 201 | 2 | 6292 |
cytoskeleton | 1.1732E-3 | 2 | 216 | 2 | 6292 |
cellular bud neck contractile ring | 5.7138E-3 | 2 | 18 | 1 | 6292 |
actomyosin contractile ring | 5.7138E-3 | 2 | 18 | 1 | 6292 |
contractile ring | 5.7138E-3 | 2 | 18 | 1 | 6292 |
cell division site | 8.5646E-3 | 2 | 27 | 1 | 6292 |
cell division site part | 8.5646E-3 | 2 | 27 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
actin polymerization or depolymerization | 1.819E-6 | 2 | 9 | 2 | 6292 |
actin filament organization | 1.151E-4 | 2 | 68 | 2 | 6292 |
actin filament severing | 3.1786E-4 | 2 | 1 | 1 | 6292 |
actin cytoskeleton organization | 3.1973E-4 | 2 | 113 | 2 | 6292 |
actin filament-based process | 3.4287E-4 | 2 | 117 | 2 | 6292 |
actin filament depolymerization | 1.2712E-3 | 2 | 4 | 1 | 6292 |
cytoskeleton organization | 1.3422E-3 | 2 | 231 | 2 | 6292 |
cellular macromolecular complex subunit organization | 1.6882E-3 | 2 | 259 | 2 | 6292 |
budding cell isotropic bud growth | 2.5415E-3 | 2 | 8 | 1 | 6292 |
protein depolymerization | 3.1764E-3 | 2 | 10 | 1 | 6292 |
budding cell apical bud growth | 3.1764E-3 | 2 | 10 | 1 | 6292 |
intracellular mRNA localization | 3.1764E-3 | 2 | 10 | 1 | 6292 |
macromolecular complex subunit organization | 3.2108E-3 | 2 | 357 | 2 | 6292 |
vacuole inheritance | 4.7627E-3 | 2 | 15 | 1 | 6292 |
mitochondrion inheritance | 9.1975E-3 | 2 | 29 | 1 | 6292 |
mitochondrion distribution | 9.1975E-3 | 2 | 29 | 1 | 6292 |
mitochondrion localization | 9.5139E-3 | 2 | 30 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
actin lateral binding | 6.3568E-4 | 2 | 2 | 1 | 6292 |
actin filament binding | 3.811E-3 | 2 | 12 | 1 | 6292 |
actin binding | 6.6645E-3 | 2 | 21 | 1 | 6292 |
protein binding | 9.4468E-3 | 2 | 612 | 2 | 6292 |