YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.09120888805]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
RET2
  • COPI vesicle coat
    		•
  • ER to Golgi vesicle-mediated transport
  • retrograde vesicle-mediated transport, Golgi to ER
    		•
  • protein binding
    		•
    SEC21
  • endosome
  • COPI vesicle coat
    		•
  • ER to Golgi vesicle-mediated transport
  • retrograde vesicle-mediated transport, Golgi to ER
    		•
  • molecular_function
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    COPI coated vesicle membrane 1.819E-6 2 9 2 6292
    COPI vesicle coat 1.819E-6 2 9 2 6292
    Golgi-associated vesicle membrane 6.0632E-6 2 16 2 6292
    COPI-coated vesicle 1.0611E-5 2 21 2 6292
    vesicle coat 2.8346E-5 2 34 2 6292
    coated vesicle membrane 3.0063E-5 2 35 2 6292
    cytoplasmic vesicle membrane 3.0063E-5 2 35 2 6292
    vesicle membrane 3.0063E-5 2 35 2 6292
    membrane coat 3.552E-5 2 38 2 6292
    coated membrane 3.552E-5 2 38 2 6292
    cytoplasmic vesicle part 3.744E-5 2 39 2 6292
    Golgi-associated vesicle 3.9411E-5 2 40 2 6292
    Golgi membrane 5.9419E-5 2 49 2 6292
    coated vesicle 1.7194E-4 2 83 2 6292
    cytoplasmic vesicle 2.8654E-4 2 107 2 6292
    membrane-bounded vesicle 2.8654E-4 2 107 2 6292
    cytoplasmic membrane-bounded vesicle 2.8654E-4 2 107 2 6292
    vesicle 3.0291E-4 2 110 2 6292
    Golgi apparatus part 3.5475E-4 2 119 2 6292
    Golgi apparatus 7.3441E-4 2 171 2 6292
    endomembrane system 3.9918E-3 2 398 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    retrograde vesicle-mediated transport, Golgi to ER 1.6421E-5 2 26 2 6292
    ER to Golgi vesicle-mediated transport 1.7194E-4 2 83 2 6292
    Golgi vesicle transport 7.0879E-4 2 168 2 6292
    vesicle-mediated transport 2.9119E-3 2 340 2 6292
    intracellular transport 7.7118E-3 2 553 2 6292
    establishment of localization in cell 9.0494E-3 2 599 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle