| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.10572625065] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| GET complex | 3.0316E-7 | 2 | 4 | 2 | 6292 |
| endoplasmic reticulum part | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| subsynaptic reticulum | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| endoplasmic reticulum | 3.3381E-3 | 2 | 364 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| retrograde vesicle-mediated transport, Golgi to ER | 1.6421E-5 | 2 | 26 | 2 | 6292 |
| Golgi vesicle transport | 7.0879E-4 | 2 | 168 | 2 | 6292 |
| calcium ion homeostasis | 2.859E-3 | 2 | 9 | 1 | 6292 |
| cellular calcium ion homeostasis | 2.859E-3 | 2 | 9 | 1 | 6292 |
| vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
| response to chemical stimulus | 3.6769E-3 | 2 | 382 | 2 | 6292 |
| response to metal ion | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
| metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| response to unfolded protein | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| response to biotic stimulus | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| response to protein stimulus | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| cellular metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| response to heat | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
| establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
| response to temperature stimulus | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |