From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.34066788222] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
ER-Golgi intermediate compartment | 5.0527E-8 | 2 | 2 | 2 | 6292 |
Golgi apparatus part | 3.5475E-4 | 2 | 119 | 2 | 6292 |
Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
COPI coated vesicle membrane | 2.859E-3 | 2 | 9 | 1 | 6292 |
COPI vesicle coat | 2.859E-3 | 2 | 9 | 1 | 6292 |
trans-Golgi network | 4.1283E-3 | 2 | 13 | 1 | 6292 |
Golgi-associated vesicle membrane | 5.0798E-3 | 2 | 16 | 1 | 6292 |
COPI-coated vesicle | 6.6645E-3 | 2 | 21 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
ARF GTPase activator activity | 3.0316E-7 | 2 | 4 | 2 | 6292 |
GTPase activator activity | 2.5061E-5 | 2 | 32 | 2 | 6292 |
small GTPase regulator activity | 8.6451E-5 | 2 | 59 | 2 | 6292 |
enzyme activator activity | 1.1171E-4 | 2 | 67 | 2 | 6292 |
GTPase regulator activity | 1.7614E-4 | 2 | 84 | 2 | 6292 |
nucleoside-triphosphatase regulator activity | 2.256E-4 | 2 | 95 | 2 | 6292 |
enzyme regulator activity | 1.0773E-3 | 2 | 207 | 2 | 6292 |
actin binding | 6.6645E-3 | 2 | 21 | 1 | 6292 |