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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.76010123338]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
TPS1
  • cytoplasm
  • alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)
    		•
  • carbohydrate metabolic process
  • response to drug
  • trehalose biosynthetic process
  • response to stress
    		•
  • alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
    		•
    TSL1
  • alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)
    		•
  • trehalose biosynthetic process
  • response to stress
    		•
  • alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
  • trehalose-phosphatase activity
  • enzyme regulator activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) 3.0316E-7 2 4 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    trehalose biosynthetic process 7.579E-7 2 6 2 6292
    disaccharide biosynthetic process 7.579E-7 2 6 2 6292
    glycoside biosynthetic process 7.579E-7 2 6 2 6292
    trehalose metabolic process 1.819E-6 2 9 2 6292
    glycoside metabolic process 2.2737E-6 2 10 2 6292
    disaccharide metabolic process 3.9411E-6 2 13 2 6292
    oligosaccharide biosynthetic process 6.0632E-6 2 16 2 6292
    oligosaccharide metabolic process 1.9099E-5 2 28 2 6292
    cellular carbohydrate biosynthetic process 1.5173E-4 2 78 2 6292
    carbohydrate biosynthetic process 2.0691E-4 2 91 2 6292
    cellular carbohydrate metabolic process 1.7276E-3 2 262 2 6292
    carbohydrate metabolic process 1.9877E-3 2 281 2 6292
    response to stress 6.2277E-3 2 497 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity 1.5158E-7 2 3 2 6292
    UDP-glucosyltransferase activity 4.5979E-6 2 14 2 6292
    glucosyltransferase activity 6.0632E-6 2 16 2 6292
    UDP-glycosyltransferase activity 1.7735E-5 2 27 2 6292
    transferase activity, transferring hexosyl groups 1.5966E-4 2 80 2 6292
    transferase activity, transferring glycosyl groups 2.7062E-4 2 104 2 6292
    trehalose-phosphatase activity 9.5344E-4 2 3 1 6292
    carbohydrate phosphatase activity 2.224E-3 2 7 1 6292
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