YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 2.10532430987]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

TRAMP complex 3.0316E-7 2 4 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

tRNA catabolic process 3.0316E-7 2 4 2 6292
snRNA catabolic process 5.0527E-7 2 5 2 6292
snoRNA catabolic process 5.0527E-7 2 5 2 6292
ncRNA polyadenylation 7.579E-7 2 6 2 6292
ncRNA catabolic process 7.579E-7 2 6 2 6292
ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process 7.579E-7 2 6 2 6292
rRNA catabolic process 7.579E-7 2 6 2 6292
polyadenylation-dependent RNA catabolic process 1.4147E-6 2 8 2 6292
polyadenylation-dependent ncRNA catabolic process 1.4147E-6 2 8 2 6292
snRNA metabolic process 1.819E-6 2 9 2 6292
ncRNA 3'-end processing 3.3348E-6 2 12 2 6292
snoRNA metabolic process 7.7306E-6 2 18 2 6292
RNA polyadenylation 1.6421E-5 2 26 2 6292
RNA 3'-end processing 4.3504E-5 2 42 2 6292
mRNA export from nucleus 1.151E-4 2 68 2 6292
mRNA transport 1.151E-4 2 68 2 6292
RNA catabolic process 1.5966E-4 2 80 2 6292
RNA export from nucleus 1.5966E-4 2 80 2 6292
RNA transport 1.6371E-4 2 81 2 6292
nucleic acid transport 1.6371E-4 2 81 2 6292
establishment of RNA localization 1.6371E-4 2 81 2 6292
RNA localization 2.1151E-4 2 92 2 6292
nucleobase, nucleoside, nucleotide and nucleic acid transport 2.304E-4 2 96 2 6292
nuclear export 2.6542E-4 2 103 2 6292
tRNA metabolic process 3.6076E-4 2 120 2 6292
nuclear transport 4.2367E-4 2 130 2 6292
nucleocytoplasmic transport 4.2367E-4 2 130 2 6292
rRNA metabolic process 4.7071E-4 2 137 2 6292
modification-dependent macromolecule catabolic process 6.7534E-4 2 164 2 6292
ncRNA processing 1.1624E-3 2 215 2 6292
ncRNA metabolic process 1.6621E-3 2 257 2 6292
cellular macromolecule catabolic process 1.7674E-3 2 265 2 6292
macromolecule catabolic process 2.1762E-3 2 294 2 6292
RNA processing 3.6384E-3 2 380 2 6292
macromolecule localization 3.9717E-3 2 397 2 6292
cellular catabolic process 4.3405E-3 2 415 2 6292
catabolic process 6.2027E-3 2 496 2 6292
intracellular transport 7.7118E-3 2 553 2 6292
establishment of localization in cell 9.0494E-3 2 599 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

polynucleotide adenylyltransferase activity 7.579E-7 2 6 2 6292
adenylyltransferase activity 3.9411E-6 2 13 2 6292
nucleotidyltransferase activity 7.0879E-4 2 168 2 6292
transferase activity, transferring phosphorus-containing groups 4.4459E-3 2 420 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle