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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 9 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
RPA14
  • DNA-directed RNA polymerase I complex
  • transcription from RNA polymerase I promoter
  • regulation of cell size
  • telomere maintenance
  • DNA-directed RNA polymerase activity
  • RPA49
  • DNA-directed RNA polymerase I complex
  • transcription from RNA polymerase I promoter
  • regulation of cell size
  • ribosome biogenesis
  • DNA-directed RNA polymerase activity
  • RPB10
  • DNA-directed RNA polymerase I complex
  • DNA-directed RNA polymerase III complex
  • DNA-directed RNA polymerase II, core complex
  • transcription from RNA polymerase III promoter
  • transcription from RNA polymerase I promoter
  • transcription from RNA polymerase II promoter
  • DNA-directed RNA polymerase activity
  • RPB5
  • DNA-directed RNA polymerase I complex
  • DNA-directed RNA polymerase III complex
  • DNA-directed RNA polymerase II, core complex
  • transcription from RNA polymerase III promoter
  • transcription from RNA polymerase I promoter
  • transcription from RNA polymerase II promoter
  • DNA-directed RNA polymerase activity
  • RPB8
  • DNA-directed RNA polymerase I complex
  • DNA-directed RNA polymerase III complex
  • DNA-directed RNA polymerase II, core complex
  • transcription from RNA polymerase III promoter
  • transcription from RNA polymerase I promoter
  • transcription from RNA polymerase II promoter
  • DNA-directed RNA polymerase activity
  • RPC10
  • DNA-directed RNA polymerase I complex
  • DNA-directed RNA polymerase III complex
  • DNA-directed RNA polymerase II, core complex
  • transcription from RNA polymerase III promoter
  • transcription from RNA polymerase I promoter
  • transcription from RNA polymerase II promoter
  • DNA-directed RNA polymerase activity
  • RPC19
  • DNA-directed RNA polymerase I complex
  • DNA-directed RNA polymerase III complex
  • transcription from RNA polymerase III promoter
  • transcription from RNA polymerase I promoter
  • ribosome biogenesis
  • DNA-directed RNA polymerase activity
  • RPC40
  • DNA-directed RNA polymerase I complex
  • DNA-directed RNA polymerase III complex
  • transcription from RNA polymerase III promoter
  • transcription from RNA polymerase I promoter
  • ribosome biogenesis
  • DNA-directed RNA polymerase activity
  • RPO26
  • DNA-directed RNA polymerase I complex
  • DNA-directed RNA polymerase III complex
  • DNA-directed RNA polymerase II, core complex
  • transcription from RNA polymerase III promoter
  • transcription from RNA polymerase I promoter
  • transcription from RNA polymerase II promoter
  • DNA-directed RNA polymerase activity
  • Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    DNA-directed RNA polymerase I complex 4.7273E-26 9 14 9 6292
    RNA polymerase complex 4.7604E-22 9 31 9 6292
    nuclear DNA-directed RNA polymerase complex 4.7604E-22 9 31 9 6292
    DNA-directed RNA polymerase complex 4.7604E-22 9 31 9 6292
    nucleolar part 2.0925E-20 9 45 9 6292
    DNA-directed RNA polymerase III complex 9.0433E-18 9 17 7 6292
    nucleolus 4.5375E-14 9 211 9 6292
    DNA-directed RNA polymerase II, core complex 1.2117E-12 9 12 5 6292
    nuclear lumen 4.8255E-11 9 453 9 6292
    organelle lumen 1.4638E-9 9 660 9 6292
    intracellular organelle lumen 1.4638E-9 9 660 9 6292
    membrane-enclosed lumen 2.4937E-9 9 700 9 6292
    nucleoplasm part 4.2031E-9 9 245 7 6292
    DNA-directed RNA polymerase II, holoenzyme 5.709E-9 9 56 5 6292
    nucleoplasm 7.0955E-9 9 264 7 6292
    non-membrane-bounded organelle 4.2994E-8 9 959 9 6292
    intracellular non-membrane-bounded organelle 4.2994E-8 9 959 9 6292
    nuclear part 1.5218E-7 9 1103 9 6292
    protein complex 2.0019E-7 9 1137 9 6292
    macromolecular complex 5.3146E-6 9 1635 9 6292
    nucleus 3.9292E-5 9 2041 9 6292
    organelle part 1.0749E-4 9 2282 9 6292
    intracellular organelle part 1.0749E-4 9 2282 9 6292
    membrane-bounded organelle 9.9391E-3 9 3771 9 6292
    intracellular membrane-bounded organelle 9.9391E-3 9 3771 9 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    transcription from RNA polymerase I promoter 3.3783E-22 9 30 9 6292
    transcription from RNA polymerase III promoter 5.8341E-15 9 38 7 6292
    transcription, DNA-dependent 1.2481E-10 9 503 9 6292
    RNA biosynthetic process 1.3652E-10 9 508 9 6292
    transcription 2.8998E-10 9 552 9 6292
    RNA metabolic process 4.101E-8 9 954 9 6292
    cellular macromolecule biosynthetic process 2.9528E-7 9 1187 9 6292
    macromolecule biosynthetic process 2.9981E-7 9 1189 9 6292
    gene expression 5.9596E-7 9 1283 9 6292
    nucleic acid metabolic process 1.4425E-6 9 1415 9 6292
    nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 3.6017E-6 9 1566 9 6292
    cellular biosynthetic process 3.6225E-6 9 1567 9 6292
    biosynthetic process 4.4215E-6 9 1602 9 6292
    cellular nitrogen compound metabolic process 1.0872E-5 9 1770 9 6292
    nitrogen compound metabolic process 1.2092E-5 9 1791 9 6292
    transcription from RNA polymerase II promoter 4.3829E-5 9 335 5 6292
    cellular macromolecule metabolic process 1.0877E-4 9 2285 9 6292
    macromolecule metabolic process 1.3953E-4 9 2349 9 6292
    primary metabolic process 9.2081E-4 9 2896 9 6292
    cellular metabolic process 1.3966E-3 9 3033 9 6292
    metabolic process 2.004E-3 9 3157 9 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    RNA polymerase activity 1.2385E-21 9 34 9 6292
    DNA-directed RNA polymerase activity 1.2385E-21 9 34 9 6292
    nucleotidyltransferase activity 5.5782E-15 9 168 9 6292
    transferase activity, transferring phosphorus-containing groups 2.4275E-11 9 420 9 6292
    transferase activity 8.0691E-9 9 797 9 6292
    catalytic activity 6.2813E-5 9 2150 9 6292

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle