| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.465212344879] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| TPC1 |
|
|
|
| YEA6 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mitochondrial envelope | 2.4514E-3 | 2 | 312 | 2 | 6292 |
| mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
| organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
| envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| cofactor transport | 3.3348E-6 | 2 | 12 | 2 | 6292 |
| thiamin pyrophosphate transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| NAD transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| thiamin transport | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| vitamin transport | 3.1764E-3 | 2 | 10 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| thiamin transmembrane transporter activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| NAD transporter activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| vitamin transporter activity | 2.224E-3 | 2 | 7 | 1 | 6292 |
| transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
| cofactor transporter activity | 4.1283E-3 | 2 | 13 | 1 | 6292 |