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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.476926757767]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytidine metabolic process 5.0527E-8 2 2 2 6292
pyrimidine ribonucleoside metabolic process 3.0316E-7 2 4 2 6292
pyrimidine salvage 1.0611E-6 2 7 2 6292
pyrimidine nucleoside metabolic process 1.4147E-6 2 8 2 6292
ribonucleoside metabolic process 8.6401E-6 2 19 2 6292
cellular metabolic compound salvage 1.1672E-5 2 22 2 6292
nucleoside metabolic process 1.6421E-5 2 26 2 6292
nucleobase, nucleoside and nucleotide biosynthetic process 2.0236E-4 2 90 2 6292
nucleobase, nucleoside, nucleotide and nucleic acid biosynthetic process 2.0236E-4 2 90 2 6292
cytosine metabolic process 3.1786E-4 2 1 1 6292
ribonucleoside catabolic process 3.1786E-4 2 1 1 6292
deoxycytidine catabolic process 3.1786E-4 2 1 1 6292
deoxyribonucleoside catabolic process 3.1786E-4 2 1 1 6292
pyrimidine deoxyribonucleoside catabolic process 3.1786E-4 2 1 1 6292
cytidine catabolic process 3.1786E-4 2 1 1 6292
pyrimidine ribonucleoside catabolic process 3.1786E-4 2 1 1 6292
deoxycytidine metabolic process 3.1786E-4 2 1 1 6292
nucleobase, nucleoside and nucleotide metabolic process 6.1875E-4 2 157 2 6292
heterocycle metabolic process 7.3441E-4 2 171 2 6292
deoxyribonucleoside metabolic process 9.5344E-4 2 3 1 6292
pyrimidine deoxyribonucleoside metabolic process 9.5344E-4 2 3 1 6292
pyrimidine nucleoside catabolic process 9.5344E-4 2 3 1 6292
cellular nitrogen compound biosynthetic process 1.5351E-3 2 247 2 6292
nucleoside catabolic process 1.5888E-3 2 5 1 6292
small molecule biosynthetic process 2.42E-3 2 310 2 6292
nucleobase, nucleoside, nucleotide and nucleic acid catabolic process 4.7627E-3 2 15 1 6292
nucleobase, nucleoside and nucleotide catabolic process 4.7627E-3 2 15 1 6292
pyrimidine base metabolic process 5.7138E-3 2 18 1 6292
cellular nitrogen compound catabolic process 7.6148E-3 2 24 1 6292
heterocycle catabolic process 8.248E-3 2 26 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

deaminase activity 4.5979E-6 2 14 2 6292
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 1.2783E-5 2 23 2 6292
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 1.5966E-4 2 80 2 6292
cytosine deaminase activity 3.1786E-4 2 1 1 6292
cytidine deaminase activity 3.1786E-4 2 1 1 6292

YRC Informatics Platform - Version 3.0
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