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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.085] [SVM Score: 0.48037120797]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
CLA4
  • actin cap
    		•
  • regulation of exit from mitosis
  • cytokinesis
  • Rho protein signal transduction
  • protein amino acid phosphorylation
  • budding cell apical bud growth
    		•
  • protein serine/threonine kinase activity
    		•
    SLG1
  • membrane fraction
  • plasma membrane
  • actin cap
    		•
  • response to heat
  • response to osmotic stress
  • cellular cell wall organization
  • Rho protein signal transduction
  • endocytosis
  • actin cytoskeleton organization
    		•
  • transmembrane receptor activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    actin cap 3.3348E-6 2 12 2 6292
    cortical actin cytoskeleton 6.6999E-5 2 52 2 6292
    cortical cytoskeleton 6.6999E-5 2 52 2 6292
    actin cytoskeleton 1.8038E-4 2 85 2 6292
    cell cortex part 2.304E-4 2 96 2 6292
    cell cortex 2.974E-4 2 109 2 6292
    cytoskeletal part 1.0156E-3 2 201 2 6292
    cytoskeleton 1.1732E-3 2 216 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    Rho protein signal transduction 9.6001E-6 2 20 2 6292
    Ras protein signal transduction 4.1432E-5 2 41 2 6292
    small GTPase mediated signal transduction 1.0186E-4 2 64 2 6292
    intracellular signal transduction 3.312E-4 2 115 2 6292
    intracellular signaling pathway 5.2022E-4 2 144 2 6292
    signaling pathway 8.5067E-4 2 184 2 6292
    signal transduction 1.1516E-3 2 214 2 6292
    signal transmission 1.1841E-3 2 217 2 6292
    signaling process 1.1841E-3 2 217 2 6292
    signaling 1.598E-3 2 252 2 6292
    budding cell apical bud growth 3.1764E-3 2 10 1 6292
    response to heat 7.6148E-3 2 24 1 6292
    regulation of exit from mitosis 7.9314E-3 2 25 1 6292
    exit from mitosis 7.9314E-3 2 25 1 6292
    response to temperature stimulus 9.8303E-3 2 31 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    transmembrane receptor activity 3.4937E-3 2 11 1 6292
    receptor activity 4.4455E-3 2 14 1 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle