From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.491189847736] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
ADK1 |
|
|
|
ADK2 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
mitochondrial envelope | 2.4514E-3 | 2 | 312 | 2 | 6292 |
mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
purine nucleoside diphosphate biosynthetic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
purine ribonucleoside diphosphate metabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
purine nucleoside diphosphate metabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
ribonucleoside diphosphate metabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
ribonucleoside diphosphate biosynthetic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
ADP biosynthetic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
ADP metabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
purine ribonucleoside diphosphate biosynthetic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
nucleotide metabolic process | 4.1068E-4 | 2 | 128 | 2 | 6292 |
nucleoside phosphate metabolic process | 4.1068E-4 | 2 | 128 | 2 | 6292 |
nucleobase, nucleoside and nucleotide metabolic process | 6.1875E-4 | 2 | 157 | 2 | 6292 |
nucleoside diphosphate biosynthetic process | 6.3568E-4 | 2 | 2 | 1 | 6292 |
nucleoside diphosphate metabolic process | 9.5344E-4 | 2 | 3 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
adenylate kinase activity | 3.0316E-7 | 2 | 4 | 2 | 6292 |
nucleotide kinase activity | 7.579E-7 | 2 | 6 | 2 | 6292 |
phosphotransferase activity, phosphate group as acceptor | 2.779E-6 | 2 | 11 | 2 | 6292 |
nucleobase, nucleoside, nucleotide kinase activity | 3.3348E-6 | 2 | 12 | 2 | 6292 |
kinase activity | 1.2395E-3 | 2 | 222 | 2 | 6292 |
transferase activity, transferring phosphorus-containing groups | 4.4459E-3 | 2 | 420 | 2 | 6292 |