From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.492736895643] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
CCC2 |
|
|
|
ENB1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
cytoplasmic vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
membrane-bounded vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
cytoplasmic membrane-bounded vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
vesicle | 3.0291E-4 | 2 | 110 | 2 | 6292 |
trans-Golgi network transport vesicle membrane | 2.224E-3 | 2 | 7 | 1 | 6292 |
trans-Golgi network transport vesicle | 3.4937E-3 | 2 | 11 | 1 | 6292 |
clathrin coated vesicle membrane | 4.7627E-3 | 2 | 15 | 1 | 6292 |
transport vesicle membrane | 4.7627E-3 | 2 | 15 | 1 | 6292 |
Golgi-associated vesicle membrane | 5.0798E-3 | 2 | 16 | 1 | 6292 |
clathrin-coated vesicle | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
ferric-enterobactin transmembrane transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
cation transmembrane transporter activity | 3.4879E-4 | 2 | 118 | 2 | 6292 |
ion transmembrane transporter activity | 5.3483E-4 | 2 | 146 | 2 | 6292 |
siderophore-iron transmembrane transporter activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
siderophore transporter activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
substrate-specific transmembrane transporter activity | 1.7943E-3 | 2 | 267 | 2 | 6292 |
transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
iron ion transmembrane transporter activity | 3.811E-3 | 2 | 12 | 1 | 6292 |
transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
cation-transporting ATPase activity | 5.0798E-3 | 2 | 16 | 1 | 6292 |
transition metal ion transmembrane transporter activity | 8.8811E-3 | 2 | 28 | 1 | 6292 |
ATPase activity, coupled to transmembrane movement of ions | 9.1975E-3 | 2 | 29 | 1 | 6292 |