| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.498323936232] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nucleoid | 1.6421E-5 | 2 | 26 | 2 | 6292 |
| mitochondrial nucleoid | 1.6421E-5 | 2 | 26 | 2 | 6292 |
| mitochondrial matrix | 7.7811E-4 | 2 | 176 | 2 | 6292 |
| mitochondrial lumen | 7.7811E-4 | 2 | 176 | 2 | 6292 |
| mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mitochondrial genome maintenance | 2.8346E-5 | 2 | 34 | 2 | 6292 |
| mitochondrion organization | 6.1087E-4 | 2 | 156 | 2 | 6292 |
| transcription from mitochondrial promoter | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| citrate metabolic process | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| propionate metabolic process | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| glutamate biosynthetic process | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| tricarboxylic acid cycle | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| acetyl-CoA catabolic process | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| glutamate metabolic process | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| acetyl-CoA metabolic process | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| coenzyme catabolic process | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| cofactor catabolic process | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| glutamine family amino acid biosynthetic process | 8.8811E-3 | 2 | 28 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| aconitate hydratase activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| hydro-lyase activity | 8.5646E-3 | 2 | 27 | 1 | 6292 |