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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.49980018013]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
BUD5
  • incipient cellular bud site
  • cellular bud neck
    		•
  • axial cellular bud site selection
  • cellular bud site selection
  • bipolar cellular bud site selection
  • small GTPase mediated signal transduction
  • pseudohyphal growth
    		•
  • guanyl-nucleotide exchange factor activity
  • Ras guanyl-nucleotide exchange factor activity
  • signal transducer activity
    		•
    LRG1
  • cytoplasm
  • cellular bud neck
  • mitochondrion
    		•
  • fungal-type cell wall biogenesis
  • small GTPase mediated signal transduction
    		•
  • Rho GTPase activator activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    cellular bud neck 4.1715E-4 2 129 2 6292
    cellular bud 6.9196E-4 2 166 2 6292
    site of polarized growth 7.0879E-4 2 168 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    small GTPase mediated signal transduction 1.0186E-4 2 64 2 6292
    intracellular signal transduction 3.312E-4 2 115 2 6292
    intracellular signaling pathway 5.2022E-4 2 144 2 6292
    signaling pathway 8.5067E-4 2 184 2 6292
    signal transduction 1.1516E-3 2 214 2 6292
    signal transmission 1.1841E-3 2 217 2 6292
    signaling process 1.1841E-3 2 217 2 6292
    signaling 1.598E-3 2 252 2 6292
    axial cellular bud site selection 9.1975E-3 2 29 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    small GTPase regulator activity 8.6451E-5 2 59 2 6292
    GTPase regulator activity 1.7614E-4 2 84 2 6292
    nucleoside-triphosphatase regulator activity 2.256E-4 2 95 2 6292
    enzyme regulator activity 1.0773E-3 2 207 2 6292
    Rho GTPase activator activity 2.859E-3 2 9 1 6292
    Ras guanyl-nucleotide exchange factor activity 5.7138E-3 2 18 1 6292
    Ras GTPase activator activity 6.3477E-3 2 20 1 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle