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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.501930168904]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

microtubule organizing center part 6.0632E-6 2 16 2 6292
microtubule organizing center 9.8679E-5 2 63 2 6292
spindle pole body 9.8679E-5 2 63 2 6292
spindle pole 1.151E-4 2 68 2 6292
spindle 1.9786E-4 2 89 2 6292
microtubule cytoskeleton 2.8118E-4 2 106 2 6292
cytoskeletal part 1.0156E-3 2 201 2 6292
cytoskeleton 1.1732E-3 2 216 2 6292
central plaque of spindle pole body 1.5888E-3 2 5 1 6292
half bridge of spindle pole body 1.5888E-3 2 5 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

spindle pole body duplication in nuclear envelope 4.5979E-6 2 14 2 6292
spindle pole body duplication 5.3053E-6 2 15 2 6292
spindle pole body organization 6.8716E-6 2 17 2 6292
microtubule organizing center organization 6.8716E-6 2 17 2 6292
microtubule cytoskeleton organization 2.3525E-4 2 97 2 6292
microtubule-based process 3.0847E-4 2 111 2 6292
cytoskeleton organization 1.3422E-3 2 231 2 6292
cellular component assembly 3.7349E-3 2 385 2 6292
cell cycle process 6.0534E-3 2 490 2 6292
cell cycle 6.95E-3 2 525 2 6292
G2/M transition of mitotic cell cycle 9.1975E-3 2 29 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle