From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.512653672347] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
trans-Golgi network | 3.9411E-6 | 2 | 13 | 2 | 6292 |
Golgi apparatus part | 3.5475E-4 | 2 | 119 | 2 | 6292 |
Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
Golgi trans cisterna | 1.5888E-3 | 2 | 5 | 1 | 6292 |
early endosome | 1.5888E-3 | 2 | 5 | 1 | 6292 |
Golgi stack | 5.0798E-3 | 2 | 16 | 1 | 6292 |
Golgi cisterna | 5.0798E-3 | 2 | 16 | 1 | 6292 |
organelle subcompartment | 5.0798E-3 | 2 | 16 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
cellular membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
phospholipid translocation | 2.224E-3 | 2 | 7 | 1 | 6292 |
lipid translocation | 2.224E-3 | 2 | 7 | 1 | 6292 |
vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
phospholipid transport | 3.811E-3 | 2 | 12 | 1 | 6292 |
vesicle fusion | 9.1975E-3 | 2 | 29 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
phospholipid-translocating ATPase activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
phospholipid transporter activity | 4.4455E-3 | 2 | 14 | 1 | 6292 |
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 4.4455E-3 | 2 | 14 | 1 | 6292 |
lipid transporter activity | 6.0308E-3 | 2 | 19 | 1 | 6292 |
ATPase activity, coupled to transmembrane movement of ions | 9.1975E-3 | 2 | 29 | 1 | 6292 |