| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.528261308354] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| COX17 |
|
|
|
| PMC1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| metal ion transport | 8.3521E-5 | 2 | 58 | 2 | 6292 |
| cation transport | 2.256E-4 | 2 | 95 | 2 | 6292 |
| ion transport | 3.6076E-4 | 2 | 120 | 2 | 6292 |
| calcium ion transport | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| intracellular copper ion transport | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| respiratory chain complex IV assembly | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| calcium ion homeostasis | 2.859E-3 | 2 | 9 | 1 | 6292 |
| cellular calcium ion homeostasis | 2.859E-3 | 2 | 9 | 1 | 6292 |
| divalent metal ion transport | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| copper ion transport | 3.811E-3 | 2 | 12 | 1 | 6292 |
| metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| cellular metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| calcium-transporting ATPase activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| copper chaperone activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| calcium ion transmembrane transporter activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| metallochaperone activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| copper ion binding | 2.859E-3 | 2 | 9 | 1 | 6292 |
| peroxiredoxin activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| thioredoxin peroxidase activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| cation-transporting ATPase activity | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| peroxidase activity | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| oxidoreductase activity, acting on peroxide as acceptor | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| transition metal ion binding | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| antioxidant activity | 7.9314E-3 | 2 | 25 | 1 | 6292 |
| ATPase activity, coupled to transmembrane movement of ions | 9.1975E-3 | 2 | 29 | 1 | 6292 |