| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.532648004247] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| integral to plasma membrane | 2.0514E-5 | 2 | 29 | 2 | 6292 |
| intrinsic to plasma membrane | 2.6678E-5 | 2 | 33 | 2 | 6292 |
| plasma membrane part | 8.0641E-5 | 2 | 57 | 2 | 6292 |
| integral to membrane | 1.6363E-3 | 2 | 255 | 2 | 6292 |
| intrinsic to membrane | 1.7276E-3 | 2 | 262 | 2 | 6292 |
| plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| response to pheromone involved in conjugation with cellular fusion | 1.44E-4 | 2 | 76 | 2 | 6292 |
| response to pheromone | 2.3525E-4 | 2 | 97 | 2 | 6292 |
| cellular response to chemical stimulus | 2.8654E-4 | 2 | 107 | 2 | 6292 |
| conjugation with cellular fusion | 3.9158E-4 | 2 | 125 | 2 | 6292 |
| conjugation | 3.979E-4 | 2 | 126 | 2 | 6292 |
| response to organic substance | 4.7071E-4 | 2 | 137 | 2 | 6292 |
| multi-organism process | 5.13E-4 | 2 | 143 | 2 | 6292 |
| sexual reproduction | 1.3656E-3 | 2 | 233 | 2 | 6292 |
| reproduction | 2.7096E-3 | 2 | 328 | 2 | 6292 |
| cell projection assembly | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| cell projection organization | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| cellular response to stimulus | 3.6193E-3 | 2 | 379 | 2 | 6292 |
| response to chemical stimulus | 3.6769E-3 | 2 | 382 | 2 | 6292 |
| pheromone-dependent signal transduction involved in conjugation with cellular fusion | 8.5646E-3 | 2 | 27 | 1 | 6292 |
| regulation of conjugation with cellular fusion by signal transduction | 8.5646E-3 | 2 | 27 | 1 | 6292 |
| G-protein coupled receptor protein signaling pathway | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| pheromone receptor activity | 5.0527E-8 | 2 | 2 | 2 | 6292 |
| mating-type factor pheromone receptor activity | 5.0527E-8 | 2 | 2 | 2 | 6292 |
| G-protein coupled receptor activity | 1.5158E-7 | 2 | 3 | 2 | 6292 |
| transmembrane receptor activity | 2.779E-6 | 2 | 11 | 2 | 6292 |
| receptor activity | 4.5979E-6 | 2 | 14 | 2 | 6292 |
| molecular transducer activity | 1.5966E-4 | 2 | 80 | 2 | 6292 |
| signal transducer activity | 1.5966E-4 | 2 | 80 | 2 | 6292 |
| mating-type a-factor pheromone receptor activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| mating-type alpha-factor pheromone receptor activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |