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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.559690581362]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
PFA3
  • fungal-type vacuole membrane
  • fungal-type vacuole
    		•
  • protein amino acid palmitoylation
  • vacuole fusion, non-autophagic
    		•
  • protein-cysteine S-palmitoleyltransferase activity
    		•
    SHR5
  • extrinsic to endoplasmic reticulum membrane
  • palmitoyltransferase complex
    		•
  • protein amino acid palmitoylation
  • protein localization
  • Ras protein signal transduction
    		•
  • protein-cysteine S-palmitoleyltransferase activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    extrinsic to endoplasmic reticulum membrane 6.3568E-4 2 2 1 6292
    palmitoyltransferase complex 1.2712E-3 2 4 1 6292
    extrinsic to organelle membrane 3.811E-3 2 12 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    protein amino acid palmitoylation 1.4147E-6 2 8 2 6292
    protein palmitoylation 1.4147E-6 2 8 2 6292
    lipoprotein metabolic process 6.6999E-5 2 52 2 6292
    lipoprotein biosynthetic process 6.6999E-5 2 52 2 6292
    protein amino acid lipidation 6.6999E-5 2 52 2 6292
    protein amino acid acylation 8.6451E-5 2 59 2 6292
    protein modification process 6.278E-3 2 499 2 6292
    macromolecule modification 8.1649E-3 2 569 2 6292
    vacuole fusion, non-autophagic 8.5646E-3 2 27 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    protein-cysteine S-palmitoleyltransferase activity 1.4147E-6 2 8 2 6292
    protein-cysteine S-acyltransferase activity 1.4147E-6 2 8 2 6292
    palmitoyltransferase activity 2.779E-6 2 11 2 6292
    S-acyltransferase activity 3.9411E-6 2 13 2 6292
    transferase activity, transferring acyl groups other than amino-acyl groups 2.1151E-4 2 92 2 6292
    acyltransferase activity 2.1151E-4 2 92 2 6292
    transferase activity, transferring acyl groups 2.8654E-4 2 107 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle