| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.587312086639] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| integral to mitochondrial outer membrane | 3.9411E-6 | 2 | 13 | 2 | 6292 |
| intrinsic to mitochondrial outer membrane | 3.9411E-6 | 2 | 13 | 2 | 6292 |
| integral to mitochondrial membrane | 4.5979E-6 | 2 | 14 | 2 | 6292 |
| integral to organelle membrane | 1.051E-4 | 2 | 65 | 2 | 6292 |
| intrinsic to organelle membrane | 1.151E-4 | 2 | 68 | 2 | 6292 |
| mitochondrial outer membrane | 2.1151E-4 | 2 | 92 | 2 | 6292 |
| mitochondrial membrane part | 2.5011E-4 | 2 | 100 | 2 | 6292 |
| outer membrane | 7.9595E-4 | 2 | 178 | 2 | 6292 |
| organelle outer membrane | 7.9595E-4 | 2 | 178 | 2 | 6292 |
| integral to membrane | 1.6363E-3 | 2 | 255 | 2 | 6292 |
| intrinsic to membrane | 1.7276E-3 | 2 | 262 | 2 | 6292 |
| mitochondrial membrane | 1.7808E-3 | 2 | 266 | 2 | 6292 |
| mitochondrial envelope | 2.4514E-3 | 2 | 312 | 2 | 6292 |
| mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
| envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
| organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| response to oxidative stress | 1.1854E-4 | 2 | 69 | 2 | 6292 |
| electron transport | 2.859E-3 | 2 | 9 | 1 | 6292 |
| response to chemical stimulus | 3.6769E-3 | 2 | 382 | 2 | 6292 |
| response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
| phytosteroid metabolic process | 8.248E-3 | 2 | 26 | 1 | 6292 |
| phytosteroid biosynthetic process | 8.248E-3 | 2 | 26 | 1 | 6292 |
| ergosterol biosynthetic process | 8.248E-3 | 2 | 26 | 1 | 6292 |
| ergosterol metabolic process | 8.248E-3 | 2 | 26 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| D-arabinono-1,4-lactone oxidase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| cytochrome-b5 reductase activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| oxidoreductase activity | 1.9877E-3 | 2 | 281 | 2 | 6292 |
| oxidoreductase activity, acting on NADH or NADPH | 6.6645E-3 | 2 | 21 | 1 | 6292 |