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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.595615215465]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

actin cytoskeleton 1.8038E-4 2 85 2 6292
cell cortex part 2.304E-4 2 96 2 6292
cell cortex 2.974E-4 2 109 2 6292
cytoskeletal part 1.0156E-3 2 201 2 6292
cytoskeleton 1.1732E-3 2 216 2 6292
cellular bud neck contractile ring 5.7138E-3 2 18 1 6292
actomyosin contractile ring 5.7138E-3 2 18 1 6292
contractile ring 5.7138E-3 2 18 1 6292
cell division site 8.5646E-3 2 27 1 6292
cell division site part 8.5646E-3 2 27 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

actin filament organization 1.151E-4 2 68 2 6292
actin cytoskeleton organization 3.1973E-4 2 113 2 6292
actin filament-based process 3.4287E-4 2 117 2 6292
cytoskeleton organization 1.3422E-3 2 231 2 6292
budding cell isotropic bud growth 2.5415E-3 2 8 1 6292
actin polymerization or depolymerization 2.859E-3 2 9 1 6292
vesicle-mediated transport 2.9119E-3 2 340 2 6292
budding cell apical bud growth 3.1764E-3 2 10 1 6292
intracellular mRNA localization 3.1764E-3 2 10 1 6292
actin cortical patch assembly 4.4455E-3 2 14 1 6292
cortical actin cytoskeleton organization 4.7627E-3 2 15 1 6292
cortical cytoskeleton organization 4.7627E-3 2 15 1 6292
vacuole inheritance 4.7627E-3 2 15 1 6292
mitochondrion inheritance 9.1975E-3 2 29 1 6292
mitochondrion distribution 9.1975E-3 2 29 1 6292
mitochondrion localization 9.5139E-3 2 30 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

actin lateral binding 6.3568E-4 2 2 1 6292
clathrin binding 3.4937E-3 2 11 1 6292
actin filament binding 3.811E-3 2 12 1 6292
actin binding 6.6645E-3 2 21 1 6292
protein binding 9.4468E-3 2 612 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle