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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.604890757973]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

Golgi medial cisterna 3.1786E-4 2 1 1 6292
Golgi apparatus 7.3441E-4 2 171 2 6292
Golgi stack 5.0798E-3 2 16 1 6292
Golgi cisterna 5.0798E-3 2 16 1 6292
organelle subcompartment 5.0798E-3 2 16 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

protein amino acid N-linked glycosylation 5.9419E-5 2 49 2 6292
protein amino acid glycosylation 1.4021E-4 2 75 2 6292
macromolecule glycosylation 1.4021E-4 2 75 2 6292
glycosylation 1.4021E-4 2 75 2 6292
glycoprotein biosynthetic process 1.6371E-4 2 81 2 6292
glycoprotein metabolic process 1.7194E-4 2 83 2 6292
cellular carbohydrate metabolic process 1.7276E-3 2 262 2 6292
carbohydrate metabolic process 1.9877E-3 2 281 2 6292
protein modification process 6.278E-3 2 499 2 6292
macromolecule modification 8.1649E-3 2 569 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transferase activity, transferring hexosyl groups 1.5966E-4 2 80 2 6292
transferase activity, transferring glycosyl groups 2.7062E-4 2 104 2 6292
acetylglucosaminyltransferase activity 1.9064E-3 2 6 1 6292
UDP-glycosyltransferase activity 8.5646E-3 2 27 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle