From Publication:  Qiu J, Noble WS (2008) Predicting CoComplexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 
Notes:  Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.608360251068] 
Complex Size:  2 proteins 
Protein 
GO Cellular Component  GO Biological Process  GO Molecular Function 
SEC12 



SOP4 



Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
integral to membrane of membrane fraction  1.5158E7  2  3  2  6292 
membrane fraction  2.0691E4  2  91  2  6292 
insoluble fraction  2.0691E4  2  91  2  6292 
cell fraction  4.1715E4  2  129  2  6292 
endoplasmic reticulum  3.3381E3  2  364  2  6292 
integral to endoplasmic reticulum membrane  9.8303E3  2  31  1  6292 
intrinsic to endoplasmic reticulum membrane  9.8303E3  2  31  1  6292 
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
ER to Golgi vesiclemediated transport  1.7194E4  2  83  2  6292 
Golgi vesicle transport  7.0879E4  2  168  2  6292 
vesiclemediated transport  2.9119E3  2  340  2  6292 
intracellular transport  7.7118E3  2  553  2  6292 
establishment of localization in cell  9.0494E3  2  599  2  6292 
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 