From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.621233306372] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
PXA1 |
|
|
|
PXA2 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
intrinsic to peroxisomal membrane | 1.0611E-6 | 2 | 7 | 2 | 6292 |
integral to peroxisomal membrane | 1.0611E-6 | 2 | 7 | 2 | 6292 |
peroxisomal membrane | 1.2783E-5 | 2 | 23 | 2 | 6292 |
microbody membrane | 1.2783E-5 | 2 | 23 | 2 | 6292 |
peroxisomal part | 3.0063E-5 | 2 | 35 | 2 | 6292 |
microbody part | 3.0063E-5 | 2 | 35 | 2 | 6292 |
microbody | 8.3521E-5 | 2 | 58 | 2 | 6292 |
peroxisome | 8.3521E-5 | 2 | 58 | 2 | 6292 |
integral to organelle membrane | 1.051E-4 | 2 | 65 | 2 | 6292 |
intrinsic to organelle membrane | 1.151E-4 | 2 | 68 | 2 | 6292 |
integral to membrane | 1.6363E-3 | 2 | 255 | 2 | 6292 |
intrinsic to membrane | 1.7276E-3 | 2 | 262 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
fatty acid transport | 3.0316E-7 | 2 | 4 | 2 | 6292 |
monocarboxylic acid transport | 4.5979E-6 | 2 | 14 | 2 | 6292 |
lipid transport | 3.3651E-5 | 2 | 37 | 2 | 6292 |
lipid localization | 3.744E-5 | 2 | 39 | 2 | 6292 |
carboxylic acid transport | 8.6451E-5 | 2 | 59 | 2 | 6292 |
organic acid transport | 8.9432E-5 | 2 | 60 | 2 | 6292 |
macromolecule localization | 3.9717E-3 | 2 | 397 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
ATPase activity, coupled to transmembrane movement of substances | 7.5032E-5 | 2 | 55 | 2 | 6292 |
primary active transmembrane transporter activity | 7.5032E-5 | 2 | 55 | 2 | 6292 |
P-P-bond-hydrolysis-driven transmembrane transporter activity | 7.5032E-5 | 2 | 55 | 2 | 6292 |
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 7.5032E-5 | 2 | 55 | 2 | 6292 |
ATPase activity, coupled to movement of substances | 8.6451E-5 | 2 | 59 | 2 | 6292 |
active transmembrane transporter activity | 3.6682E-4 | 2 | 121 | 2 | 6292 |
ATPase activity, coupled | 5.5711E-4 | 2 | 149 | 2 | 6292 |
ATPase activity | 1.1194E-3 | 2 | 211 | 2 | 6292 |
transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
nucleoside-triphosphatase activity | 2.7262E-3 | 2 | 329 | 2 | 6292 |
hydrolase activity, acting on acid anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
pyrophosphatase activity | 3.1391E-3 | 2 | 353 | 2 | 6292 |
transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |