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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.621233306372]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
PXA1
  • integral to peroxisomal membrane
    		•
  • fatty acid transport
    		•
  • ATPase activity, coupled to transmembrane movement of substances
    		•
    PXA2
  • integral to peroxisomal membrane
    		•
  • fatty acid transport
    		•
  • ATPase activity, coupled to transmembrane movement of substances
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    intrinsic to peroxisomal membrane 1.0611E-6 2 7 2 6292
    integral to peroxisomal membrane 1.0611E-6 2 7 2 6292
    peroxisomal membrane 1.2783E-5 2 23 2 6292
    microbody membrane 1.2783E-5 2 23 2 6292
    peroxisomal part 3.0063E-5 2 35 2 6292
    microbody part 3.0063E-5 2 35 2 6292
    microbody 8.3521E-5 2 58 2 6292
    peroxisome 8.3521E-5 2 58 2 6292
    integral to organelle membrane 1.051E-4 2 65 2 6292
    intrinsic to organelle membrane 1.151E-4 2 68 2 6292
    integral to membrane 1.6363E-3 2 255 2 6292
    intrinsic to membrane 1.7276E-3 2 262 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    fatty acid transport 3.0316E-7 2 4 2 6292
    monocarboxylic acid transport 4.5979E-6 2 14 2 6292
    lipid transport 3.3651E-5 2 37 2 6292
    lipid localization 3.744E-5 2 39 2 6292
    carboxylic acid transport 8.6451E-5 2 59 2 6292
    organic acid transport 8.9432E-5 2 60 2 6292
    macromolecule localization 3.9717E-3 2 397 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    ATPase activity, coupled to transmembrane movement of substances 7.5032E-5 2 55 2 6292
    primary active transmembrane transporter activity 7.5032E-5 2 55 2 6292
    P-P-bond-hydrolysis-driven transmembrane transporter activity 7.5032E-5 2 55 2 6292
    hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 7.5032E-5 2 55 2 6292
    ATPase activity, coupled to movement of substances 8.6451E-5 2 59 2 6292
    active transmembrane transporter activity 3.6682E-4 2 121 2 6292
    ATPase activity, coupled 5.5711E-4 2 149 2 6292
    ATPase activity 1.1194E-3 2 211 2 6292
    transmembrane transporter activity 2.3578E-3 2 306 2 6292
    nucleoside-triphosphatase activity 2.7262E-3 2 329 2 6292
    hydrolase activity, acting on acid anhydrides 3.1391E-3 2 353 2 6292
    hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 3.1391E-3 2 353 2 6292
    pyrophosphatase activity 3.1391E-3 2 353 2 6292
    transporter activity 4.1132E-3 2 404 2 6292
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