YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: RTT107

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #02 Alpha Factor Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

New Feature: Upload Your Own Microscopy Data

  PROTEIN(S) PUBLICATION
View Data RTT107 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..119] ORFEUS 8.32 Breast cancer associated protein, BRCA1
2 View Details [120..260] ORFEUS 8.32 Breast cancer associated protein, BRCA1
3 View Details [261..359] deduced N/A No confident structure predictions are available.
4 View Details [360..452] ORFEUS 7.91 NAD+-dependent DNA ligase, domain 3; NAD+-dependent DNA ligase; Adenylation domain of NAD+-dependent DNA ligase
5 View Details [453..747] PSI-BLAST 32.39794 Heavy meromyosin subfragment
6 View Details [748..834] PSI-BLAST 4.30103 Tropomyosin
7 View Details [835..1070] MSA 2.803997 View MSA. No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • damaged DNA binding
  • 2.78264840479873 bayes_pls_golite062009
  • binding
  • 2.39904249850929 bayes_pls_golite062009
  • nucleic acid binding
  • 2.01217461524277 bayes_pls_golite062009
  • DNA binding
  • 1.94626538619156 bayes_pls_golite062009
  • transcription regulator activity
  • 1.6615655042871 bayes_pls_golite062009
  • protein binding
  • 1.25126059595954 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.87932139868144 bayes_pls_golite062009
  • telomeric DNA binding
  • 0.53051501110858 bayes_pls_golite062009
  • structure-specific DNA binding
  • 0.436014478237905 bayes_pls_golite062009
  • transcription activator activity
  • 0.355931500039388 bayes_pls_golite062009
  • ligase activity
  • 0.334005199756535 bayes_pls_golite062009
  • transcription factor binding
  • 0.27424353108553 bayes_pls_golite062009
  • transcription repressor activity
  • 0.210876161781476 bayes_pls_golite062009
  • catalytic activity
  • 0.17721113579921 bayes_pls_golite062009
  • double-stranded DNA binding
  • 0.163902958036495 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.
    7 No functions predicted.




    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle