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Protein Overview: gi|15233170, gi|...

General Information:
Name(s) found: gi|7329637 [NCBI NR]
gi|15233170 [NCBI NR]
gi|11358032 [NCBI NR]
gi|111074420 [NCBI NR]
Description(s) found:
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  • gi|7329637|emb|CAB82702.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15233170|ref|NP_191067.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T47646 hypothetical protein T15C9.70 - Arabidopsis thaliana [NCBI NR]
  • gi|111074420|gb|ABH04583.1| At3g55070 [Arabidopsis thaliana] [NCBI NR]
  • (Q9M2V9) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|11358032|pir||T47646 hypothetical protein T15C9.70 - Arabidopsis thalianagi|15233170|ref|NP_191067.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G37880.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41552.1); contains InterPro domain CT11-RanBPM (InterPro:IPR013144); contains InterPro domain [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative protein [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g55070 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G37880.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41552.1); contains InterPro domain CT11-RanBPM (InterPro:IPR013144); contains InterPro domain LisH dimerisation motif (InterPro:IPR006594); contains InterPro domain CTLH, C-terminal to LisH motif (InterPro:IPR006595) | chr3:20419354-20421864 FORWARD [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: | LisH/CRA/RING-U-box domains-containing protein | chr3:20408377-20410887 FORWARD LENGTH=418 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At3g55070 OS=Arabidopsis thaliana GN=T15C9_70 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 418 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIDSATNGN SDTVMTESAA TITPSPVVVS SSRSNQFTES LKLEHQLLRV PFEHYKKTIR  60
   61 TNHRSFEKEV STIVNGVGEL ADSDWSKDDT VSRLTCLVTR LQGLKRKLEE GSNVENLQAQ 120
  121 RCRARIDHLD SVDVENITEW NNTKLKRILV DYMLRMSYFE TATKLSESSN IMDLVDIDIF 180
  181 REAKKVIDAL KNREVASALT WCADNKTRLK KSKSKFEFQL RLQEFIELVR VDTAESYKKA 240
  241 IQYARKHLAS WGTTHMKELQ HVLATLAFKS TTECSKYKVL FELRQWDVLV DQFKQEFCKL 300
  301 YGMTMEPLLN IYLQAGLSAL KTPYGLEEGC TKEDPLSQEN FRKLALPLPF SKQHHSKLVC 360
  361 YISKELMDTE NPPQVLPNGY VYSTKALKEM AEKNGGKITC PRTGLVCNYT ELVKAYIS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..418] PSI-BLAST 4.39794 Cbl; N-terminal domain of cbl (N-cbl); CBL

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cytoskeletal protein binding
    		•  3.49668552859347 bayes_pls_golite062009
  • actin binding
    		•  3.42581365835039 bayes_pls_golite062009
  • binding
    		•  3.12724619324809 bayes_pls_golite062009
  • molecular transducer activity
    		•  2.73814202660947 bayes_pls_golite062009
  • signal transducer activity
    		•  2.73814202660947 bayes_pls_golite062009
  • protein binding
    		•  2.14586566310919 bayes_pls_golite062009
  • motor activity
    		•  2.12755976181034 bayes_pls_golite062009
  • structural constituent of muscle
    		•  1.91532696439966 bayes_pls_golite062009
  • actin filament binding
    		•  1.80156231889221 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.79278689121507 bayes_pls_golite062009
  • microfilament motor activity
    		•  1.6616628020467 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.59077352153329 bayes_pls_golite062009
  • DNA binding
    		•  1.49540318847431 bayes_pls_golite062009
  • tubulin binding
    		•  1.46254997073304 bayes_pls_golite062009
  • calcium ion binding
    		•  1.40919295397643 bayes_pls_golite062009
  • molecular adaptor activity
    		•  1.13202898933953 bayes_pls_golite062009
  • microtubule binding
    		•  1.02453072828852 bayes_pls_golite062009
  • myosin binding
    		•  0.946386272405561 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.937092252245555 bayes_pls_golite062009
  • SH3/SH2 adaptor activity
    		•  0.9219530203998 bayes_pls_golite062009
  • transcription factor activity
    		•  0.862300124095671 bayes_pls_golite062009
  • structural molecule activity
    		•  0.800850121197479 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.705770920427699 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.704182213196292 bayes_pls_golite062009
  • kinase regulator activity
    		•  0.69502098407037 bayes_pls_golite062009
  • receptor binding
    		•  0.66447316916504 bayes_pls_golite062009
  • hydrolase activity
    		•  0.653894750660658 bayes_pls_golite062009
  • actin monomer binding
    		•  0.47945349585403 bayes_pls_golite062009
  • protein binding, bridging
    		•  0.370788151516215 bayes_pls_golite062009
  • actin-dependent ATPase activity
    		•  0.1582139439683 bayes_pls_golite062009
  • structural constituent of cytoskeleton
    		•  0.116648335890738 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle