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Protein Overview: COP10_ARATH

General Information:
Name(s) found: COP10_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9280307|dbj|BAB01762.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|55976602|sp|Q9LJD7.1|COP10_ARATH RecName: Full=Constitutive photomorphogenesis protein 10 [NCBI NR]
  • gi|22331064|ref|NP_566459.2| FUS9 (FUSCA 9); protein binding / ubiquitin-protein ligase [Arabidopsis thaliana] [NCBI NR]
  • gi|20065779|gb|AAK57749.1| ubiquitin-conjugating enzyme COP10 [Arabidopsis thaliana] [NCBI NR]
  • gi|110738728|dbj|BAF01288.1| ubiquitin-conjugating enzyme COP10 [Arabidopsis thaliana] [NCBI NR]
  • Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1 [Swiss-Prot]
  • (Q9LJD7) Genomic DNA, chromosome 3, P1 clone: MRP15 (EC 6.3.2.19) (Ubiquitin-conjugating enzyme COP10) (Ubiquitin-conjugating enzyme E2) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|20065779|gb|AAK57749.1| ubiquitin-conjugating enzyme COP10 [Arabidopsis thaliana]gi|22331064|ref|NP_566459.2| ubiquitin-conjugating enzyme (COP10) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Constitutive photomorphogenesis protein 10 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: EMB144, COP10, CIN4, FUS9 | FUS9 (FUSCA 9); ubiquitin-protein ligase | chr3:4423576-4424804 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Constitutive photomorphogenesis protein 10 [nr-271106-contam.fasta]
  • ubiquitin-conjugating enzyme COP10 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • FUS9 (FUSCA 9); ubiquitin conjugating enzyme [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: FUS9, EMB144, COP10, CIN4 | Ubiquitin-conjugating enzyme family protein | chr3:4423569-4424797 REVERSE LENGTH=182 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 182 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: NONE FOUND
    Molecular Function: ubiquitin-protein ligase activity [ISS]
    protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTPGGSGRL RPLPTAMYAG YSGTASSWVA KTSVSASGKR IQREMAELNI DPPPDCSAGP  60
   61 KGDNLYHWIA TIIGPSGTPY EGGIFFLDII FPSDYPFKPP KLVFKTRIYH CNVDTAGDLS 120
  121 VNILRDSWSP ALTITKVLQA IRSIFLKPEP YSPALPVIAR LYLTDREKHD EVAKEWTLRF 180
  181 AK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..182] PSI-BLAST 55.221849 Human Ubiquitin-Conjugating Enzyme (E2) UbcH5b mutant Ser94Gly

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  11.3486134076304 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  11.2964721480824 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  10.2401422444624 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  8.93602533934698 bayes_pls_golite062009
  • ligase activity
    		•  5.17219147802758 bayes_pls_golite062009
  • SUMO ligase activity
    		•  3.88357560284404 bayes_pls_golite062009
  • ISG15 ligase activity
    		•  3.37361650623694 bayes_pls_golite062009
  • NEDD8 ligase activity
    		•  3.30521803258995 bayes_pls_golite062009
  • HLH domain binding
    		•  2.41376652679018 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.21355731489173 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.13970605403492 bayes_pls_golite062009
  • DNA binding
    		•  1.95596447916631 bayes_pls_golite062009
  • protein binding
    		•  1.77678273247394 bayes_pls_golite062009
  • binding
    		•  1.75350658654805 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.5236035191291 bayes_pls_golite062009
  • transcription activator activity
    		•  1.19240180311941 bayes_pls_golite062009
  • catalytic activity
    		•  0.891402822028799 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.58835335751383 bayes_pls_golite062009
  • kinase activity
    		•  0.519703305315987 bayes_pls_golite062009
  • protein kinase activity
    		•  0.443948654247666 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.373779304908933 bayes_pls_golite062009
  • small protein activating enzyme activity
    		•  0.36227294335656 bayes_pls_golite062009
  • protein serine/threonine kinase activity
    		•  0.182854082413338 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.122859425935324 bayes_pls_golite062009
  • transferase activity
    		•  0.0984525836903841 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0104967529560147 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.62

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle